Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005322A_C01 KMC005322A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564152.1| expressed protein; protein id: At1g21790.1, sup... 145 2e-34
dbj|BAB64097.1| P0039A07.3 [Oryza sativa (japonica cultivar-grou... 126 2e-28
gb|EAA36933.1| GLP_333_1057_74 [Giardia lamblia ATCC 50803] 33 2.3
>ref|NP_564152.1| expressed protein; protein id: At1g21790.1, supported by cDNA:
37444., supported by cDNA: gi_17380913, supported by
cDNA: gi_20258982 [Arabidopsis thaliana]
gi|5263332|gb|AAD41434.1|AC007727_23 F8K7.23
[Arabidopsis thaliana]
gi|6552728|gb|AAF16527.1|AC013482_1 T26F17.1
[Arabidopsis thaliana] gi|17380914|gb|AAL36269.1|
unknown protein [Arabidopsis thaliana]
gi|20258983|gb|AAM14207.1| unknown protein [Arabidopsis
thaliana] gi|21593249|gb|AAM65198.1| unknown
[Arabidopsis thaliana]
Length = 288
Score = 145 bits (367), Expect = 2e-34
Identities = 68/105 (64%), Positives = 87/105 (82%)
Frame = -2
Query: 552 LHSIFLHVRKVRRMAGVRDAKSSIVKLEWFLNWVTFLVARFASHILITVKLIRDAHKFEK 373
+HSIFLHVRK+RRMAG+RD+ +++VKLEW LNW F+ AR HILIT+KLI+DAHKF K
Sbjct: 180 MHSIFLHVRKLRRMAGIRDSNTALVKLEWVLNWTAFVFARCIPHILITIKLIKDAHKFGK 239
Query: 372 GVELPMALFGMAGMNLLNIGLGIDLLKAFKREKKSQQANHRQHHE 238
GVELP+AL GMAGMN+LN+GLG+DL AF+RE+ +HR++ E
Sbjct: 240 GVELPLALSGMAGMNILNVGLGLDLFHAFRRER-----SHRRNQE 279
>dbj|BAB64097.1| P0039A07.3 [Oryza sativa (japonica cultivar-group)]
gi|20160870|dbj|BAB89809.1| P0677H08.24 [Oryza sativa
(japonica cultivar-group)]
Length = 306
Score = 126 bits (317), Expect = 2e-28
Identities = 62/88 (70%), Positives = 70/88 (79%)
Frame = -2
Query: 528 RKVRRMAGVRDAKSSIVKLEWFLNWVTFLVARFASHILITVKLIRDAHKFEKGVELPMAL 349
RK+RRMAG RD IVKLEW LNW TF+ AR A HILIT KLI DAHKF+ G+ELP+AL
Sbjct: 215 RKLRRMAGFRDYNRKIVKLEWVLNWTTFVSARVACHILITYKLIIDAHKFDSGIELPLAL 274
Query: 348 FGMAGMNLLNIGLGIDLLKAFKREKKSQ 265
FGMAGMNLLNI LG+DLLKA+ E+ Q
Sbjct: 275 FGMAGMNLLNIFLGLDLLKAYTLERNQQ 302
>gb|EAA36933.1| GLP_333_1057_74 [Giardia lamblia ATCC 50803]
Length = 327
Score = 33.1 bits (74), Expect = 2.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 538 SACEKSETNGWCSRCKEQH 482
S C KS+T GWC++C + H
Sbjct: 80 SGCAKSQTGGWCTKCGDDH 98
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 438,521,252
Number of Sequences: 1393205
Number of extensions: 8754334
Number of successful extensions: 19546
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19536
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
