Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005321A_C01 KMC005321A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB19331.1| contains EST AU031225(E61165),D15191(C0235)~unkn... 40 7e-07
ref|NP_196435.1| nhp2-like protein; protein id: At5g08180.1, sup... 33 0.012
gb|EAA15670.1| hypothetical protein [Plasmodium yoelii yoelii] 35 0.84
ref|NP_200030.1| homeodomain protein; protein id: At5g52170.1 [A... 33 2.4
gb|EAA12463.1| ebiP6827 [Anopheles gambiae str. PEST] 32 7.1
>dbj|BAB19331.1| contains EST AU031225(E61165),D15191(C0235)~unknown protein [Oryza
sativa (japonica cultivar-group)]
gi|23589940|dbj|BAC20622.1| contains EST
AU031225(E61165)~nhp2-like protein [Oryza sativa
(japonica cultivar-group)]
Length = 150
Score = 40.0 bits (92), Expect(2) = 7e-07
Identities = 16/29 (55%), Positives = 25/29 (86%)
Frame = -1
Query: 332 EMEQGERETLKSDYDQVVSDVTEITTSLF 246
E+E+ +E LK+DYDQV+S+V E+T+S+F
Sbjct: 122 ELEEDVKEKLKTDYDQVMSEVAEVTSSMF 150
Score = 34.7 bits (78), Expect(2) = 7e-07
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = -3
Query: 411 KEDLSGAGATNRPTSCVLLLTQ 346
KEDL+ AG T RPT CVL+LT+
Sbjct: 96 KEDLATAGTTKRPTCCVLVLTK 117
>ref|NP_196435.1| nhp2-like protein; protein id: At5g08180.1, supported by cDNA:
gi_14190414, supported by cDNA: gi_15215892 [Arabidopsis
thaliana] gi|11358578|pir||T50503 nhp2-like protein -
Arabidopsis thaliana gi|8346555|emb|CAB93719.1|
nhp2-like protein [Arabidopsis thaliana]
gi|14190415|gb|AAK55688.1|AF378885_1 AT5g08180/T22D6_120
[Arabidopsis thaliana] gi|15215893|gb|AAK91490.1|
AT5g08180/T22D6_120 [Arabidopsis thaliana]
Length = 156
Score = 33.1 bits (74), Expect(2) = 0.012
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = -3
Query: 411 KEDLSGAGATNRPTSCVLLL 352
KEDL+ AGAT RPT CVL++
Sbjct: 102 KEDLAQAGATKRPTCCVLVM 121
Score = 26.9 bits (58), Expect(2) = 0.012
Identities = 11/23 (47%), Positives = 16/23 (68%)
Frame = -1
Query: 317 ERETLKSDYDQVVSDVTEITTSL 249
E LK+DY+QV D+ E+ TS+
Sbjct: 133 ELAKLKTDYEQVSDDIKELATSV 155
>gb|EAA15670.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1510
Score = 34.7 bits (78), Expect = 0.84
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Frame = +3
Query: 30 IFLTKKQCTKHIQCFF----IEEKIMNS*KENLGNNLSQVRLKSSTRENKKRERKTAKTQ 197
+F K C C + I E+++N+ +++ N + R+ + K ER +T
Sbjct: 1225 LFFPKIICNNDFICLYTNRQIYERLINNYNDSITNLIRIYRMYDDVNKQKHAERTNYETF 1284
Query: 198 KCERGANSTDTFVIVSKK*SCNLSNI*HNLI 290
+CE+ S + K NI HN+I
Sbjct: 1285 RCEQNEGSKFVLNLFLPKKLTKKKNILHNII 1315
>ref|NP_200030.1| homeodomain protein; protein id: At5g52170.1 [Arabidopsis thaliana]
gi|8885530|dbj|BAA97460.1| homeodomain transcription
factor-like [Arabidopsis thaliana]
Length = 682
Score = 33.1 bits (74), Expect = 2.4
Identities = 28/101 (27%), Positives = 45/101 (43%)
Frame = +2
Query: 65 TMFLYRRKDHEFIKRESREQSFPSEIKV*HKRKQKARKENSKDSKMRTWSQQYRYICDCF 244
+ FL + KD EF R + SF + K++Q+ +K+ K R S Q + + F
Sbjct: 17 SFFLGKLKDDEFESRSLSDDSFDAMSGDEDKQEQRPKKKKRKTKYHRHTSYQIQELESFF 76
Query: 245 KKVKL*SQ*HLTQLDHNLTLVSLVPLVPFHYVQRWVSSKTQ 367
K+ ++ +L LTL S + F + R KTQ
Sbjct: 77 KECPHPNEKQRLELGKKLTLES--KQIKFWFQNRRTQMKTQ 115
>gb|EAA12463.1| ebiP6827 [Anopheles gambiae str. PEST]
Length = 2811
Score = 31.6 bits (70), Expect = 7.1
Identities = 12/35 (34%), Positives = 20/35 (56%)
Frame = -3
Query: 261 YNFTFLKQSQMYLYCWLHVRIFESLLFSFLAFCFL 157
Y F +Q Q++++ ++ +F S F FLA C L
Sbjct: 2669 YGLVFFRQDQLHIHLFVFFSVFFSCFFLFLAICVL 2703
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 434,586,735
Number of Sequences: 1393205
Number of extensions: 8339647
Number of successful extensions: 22868
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 21416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22839
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
