Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005318A_C02 KMC005318A_c02
(1006 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567786.1| putative protein; protein id: At4g27720.1, supp... 107 4e-22
gb|AAG52174.1|AC012329_1 putative transporter; 8780-5873 [Arabid... 106 5e-22
ref|NP_190500.1| putative protein; protein id: At3g49310.1 [Arab... 106 5e-22
ref|NP_176646.1| unknown protein; protein id: At1g64650.1 [Arabi... 90 6e-17
gb|AAF19685.1|AC009519_19 F1N19.22 [Arabidopsis thaliana] 90 6e-17
>ref|NP_567786.1| putative protein; protein id: At4g27720.1, supported by cDNA:
113484., supported by cDNA: gi_13272472, supported by
cDNA: gi_15912260, supported by cDNA: gi_16930438
[Arabidopsis thaliana]
gi|13272473|gb|AAK17175.1|AF325107_1 putative protein
[Arabidopsis thaliana] gi|15912261|gb|AAL08264.1|
AT4g27720/T29A15_210 [Arabidopsis thaliana]
gi|16930439|gb|AAL31905.1|AF419573_1 AT4g27720/T29A15_210
[Arabidopsis thaliana] gi|21536852|gb|AAM61184.1|
putative transporter [Arabidopsis thaliana]
gi|27764934|gb|AAO23588.1| At4g27720/T29A15_210
[Arabidopsis thaliana]
Length = 460
Score = 107 bits (266), Expect = 4e-22
Identities = 51/68 (75%), Positives = 61/68 (89%), Gaps = 1/68 (1%)
Frame = -1
Query: 1006 RIPLNIFVCVVLYNVDAFPITVMFGMCSIFLGVASILTRRLLLLVEKPKTEDW-QMKERD 830
RIPLNIFVCVVLYNV+AFPITVMFGMCSIFL VAS+L RRL+++V+KPKT DW ++ER+
Sbjct: 393 RIPLNIFVCVVLYNVNAFPITVMFGMCSIFLFVASLLQRRLMMIVDKPKTNDWTPLEERN 452
Query: 829 NESEPLNI 806
E +PLNI
Sbjct: 453 TEEDPLNI 460
>gb|AAG52174.1|AC012329_1 putative transporter; 8780-5873 [Arabidopsis thaliana]
Length = 460
Score = 106 bits (265), Expect = 5e-22
Identities = 50/68 (73%), Positives = 60/68 (87%), Gaps = 1/68 (1%)
Frame = -1
Query: 1006 RIPLNIFVCVVLYNVDAFPITVMFGMCSIFLGVASILTRRLLLLVEKPKTEDWQ-MKERD 830
R+PLNIFVC+VLYNVDAFPIT+MFGMCSIFL VASIL RRL+++ EKPK EDW MKER+
Sbjct: 393 RVPLNIFVCIVLYNVDAFPITIMFGMCSIFLFVASILQRRLMVISEKPKAEDWSPMKERN 452
Query: 829 NESEPLNI 806
+E +PL +
Sbjct: 453 SEVDPLTL 460
>ref|NP_190500.1| putative protein; protein id: At3g49310.1 [Arabidopsis thaliana]
gi|11292198|pir||T45836 hypothetical protein F2K15.170 -
Arabidopsis thaliana gi|6723401|emb|CAB66410.1| putative
protein [Arabidopsis thaliana]
Length = 482
Score = 106 bits (265), Expect = 5e-22
Identities = 50/68 (73%), Positives = 60/68 (87%), Gaps = 1/68 (1%)
Frame = -1
Query: 1006 RIPLNIFVCVVLYNVDAFPITVMFGMCSIFLGVASILTRRLLLLVEKPKTEDWQ-MKERD 830
R+PLNIFVC+VLYNVDAFPIT+MFGMCSIFL VASIL RRL+++ EKPK EDW MKER+
Sbjct: 415 RVPLNIFVCIVLYNVDAFPITIMFGMCSIFLFVASILQRRLMVISEKPKAEDWSPMKERN 474
Query: 829 NESEPLNI 806
+E +PL +
Sbjct: 475 SEVDPLTL 482
>ref|NP_176646.1| unknown protein; protein id: At1g64650.1 [Arabidopsis thaliana]
Length = 462
Score = 89.7 bits (221), Expect = 6e-17
Identities = 45/69 (65%), Positives = 57/69 (82%), Gaps = 3/69 (4%)
Frame = -1
Query: 1006 RIPLNIFVCVVLYNVDAFPITVMFGMCSIFLGVASILTRRLLLLVE--KPKTEDWQM-KE 836
RIPLNIFVC+VLYNVDAFP+TVMFGMCS+FL VASIL RRL+ + E K ++++W KE
Sbjct: 393 RIPLNIFVCLVLYNVDAFPMTVMFGMCSVFLFVASILQRRLMNVAEIHKSRSQEWSAEKE 452
Query: 835 RDNESEPLN 809
+E++PLN
Sbjct: 453 MTSEADPLN 461
>gb|AAF19685.1|AC009519_19 F1N19.22 [Arabidopsis thaliana]
Length = 474
Score = 89.7 bits (221), Expect = 6e-17
Identities = 45/69 (65%), Positives = 57/69 (82%), Gaps = 3/69 (4%)
Frame = -1
Query: 1006 RIPLNIFVCVVLYNVDAFPITVMFGMCSIFLGVASILTRRLLLLVE--KPKTEDWQM-KE 836
RIPLNIFVC+VLYNVDAFP+TVMFGMCS+FL VASIL RRL+ + E K ++++W KE
Sbjct: 405 RIPLNIFVCLVLYNVDAFPMTVMFGMCSVFLFVASILQRRLMNVAEIHKSRSQEWSAEKE 464
Query: 835 RDNESEPLN 809
+E++PLN
Sbjct: 465 MTSEADPLN 473
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 807,755,109
Number of Sequences: 1393205
Number of extensions: 16946009
Number of successful extensions: 34115
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 32819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34093
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 57945683670
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
