Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005317A_C01 KMC005317A_c01
(686 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC19183.1| expansin [Cicer arietinum] 254 e-110
gb|AAM89261.1|AF527800_1 expansin 3 [Malus x domestica] 255 e-109
gb|AAM46999.1|AF512541_1 alpha-expansin precursor [Gossypium hir... 246 e-108
gb|AAG13983.1|AF297522_1 expansin 2 [Prunus avium] 245 e-104
gb|AAL40354.1|AF448467_1 alpha-expansin [Prunus cerasus] 245 e-104
>emb|CAC19183.1| expansin [Cicer arietinum]
Length = 245
Score = 254 bits (649), Expect(2) = e-110
Identities = 123/150 (82%), Positives = 133/150 (88%), Gaps = 3/150 (2%)
Frame = +3
Query: 3 MALLGF*FCLGIFSF-VSHVNGYG-YGGWTNAHATFYGGSDASGTMGGACGYGNLISQGY 176
M+LLGF LGIF + VSHV G+G + W NAHATFYGGSDASGTMGGACGYGNL SQGY
Sbjct: 1 MSLLGF-ILLGIFLYKVSHVKGHGGHVSWINAHATFYGGSDASGTMGGACGYGNLYSQGY 59
Query: 177 GTNTAALSTALFNSGLSCGACFQIKCVNDPQWCLPG-SIVVTATNFCPPGGWCDPPNHHF 353
GTNTAALSTALFN+GLSCGAC++IKCVNDPQWC+ G SIVVTATNFCPPGGWCDPPNHHF
Sbjct: 60 GTNTAALSTALFNNGLSCGACYEIKCVNDPQWCIAGSSIVVTATNFCPPGGWCDPPNHHF 119
Query: 354 DLSQPIFQHIAQYKAGIVPVAYRRVQMQEK 443
DLSQPIFQ IAQYKA IVPVAYRRV+ + K
Sbjct: 120 DLSQPIFQQIAQYKARIVPVAYRRVRCKRK 149
Score = 167 bits (424), Expect(2) = e-110
Identities = 79/85 (92%), Positives = 82/85 (95%)
Frame = +1
Query: 430 RCRRKDGIRFTINGHSYFNLVLVTNVGGAGDVHAVAIKGSRTRWQAMSRNWGQNWQSNSY 609
RC+RK GIRFTINGHSYFNLVLVTNVGGAGDVH+VAIKGSR+RWQAMSRNWGQNWQSNS
Sbjct: 145 RCKRKGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRSRWQAMSRNWGQNWQSNST 204
Query: 610 LNGQSLSFVVTTSNGHSVVSFNVAP 684
LNGQSLSFVVTTSNGHSVVSFN AP
Sbjct: 205 LNGQSLSFVVTTSNGHSVVSFNAAP 229
>gb|AAM89261.1|AF527800_1 expansin 3 [Malus x domestica]
Length = 241
Score = 255 bits (652), Expect(2) = e-109
Identities = 115/147 (78%), Positives = 128/147 (86%)
Frame = +3
Query: 3 MALLGF*FCLGIFSFVSHVNGYGYGGWTNAHATFYGGSDASGTMGGACGYGNLISQGYGT 182
MA G +G S VS VNGY YGGW+NAHATFYGG DASGTMGGACGYGNL SQGYGT
Sbjct: 1 MAFFGI-LVIGFLSLVSSVNGY-YGGWSNAHATFYGGGDASGTMGGACGYGNLYSQGYGT 58
Query: 183 NTAALSTALFNSGLSCGACFQIKCVNDPQWCLPGSIVVTATNFCPPGGWCDPPNHHFDLS 362
NTAALSTALFN+GL+CGAC+QI+CVNDPQWCLPGSI+VTATNFCPPGGWCDPP HFDLS
Sbjct: 59 NTAALSTALFNNGLTCGACYQIRCVNDPQWCLPGSIIVTATNFCPPGGWCDPPQQHFDLS 118
Query: 363 QPIFQHIAQYKAGIVPVAYRRVQMQEK 443
QP+F IAQYKAG+VPV+YRRV+ + +
Sbjct: 119 QPVFLRIAQYKAGVVPVSYRRVRCRRR 145
Score = 161 bits (407), Expect(2) = e-109
Identities = 74/85 (87%), Positives = 81/85 (95%)
Frame = +1
Query: 430 RCRRKDGIRFTINGHSYFNLVLVTNVGGAGDVHAVAIKGSRTRWQAMSRNWGQNWQSNSY 609
RCRR+ GIRFT+NGHSYFNLVLVTNVGGAGDV +VAIKGSRTRWQAMSRNWGQNWQSNSY
Sbjct: 141 RCRRRGGIRFTVNGHSYFNLVLVTNVGGAGDVQSVAIKGSRTRWQAMSRNWGQNWQSNSY 200
Query: 610 LNGQSLSFVVTTSNGHSVVSFNVAP 684
LNGQSLSF+VTTS+G +VS+NVAP
Sbjct: 201 LNGQSLSFIVTTSDGRRLVSYNVAP 225
>gb|AAM46999.1|AF512541_1 alpha-expansin precursor [Gossypium hirsutum]
Length = 244
Score = 246 bits (627), Expect(2) = e-108
Identities = 113/143 (79%), Positives = 125/143 (87%)
Frame = +3
Query: 3 MALLGF*FCLGIFSFVSHVNGYGYGGWTNAHATFYGGSDASGTMGGACGYGNLISQGYGT 182
M LGF + S ++ V+G G WTNAHATFYGG DASGTMGGACGYGNL SQGYG
Sbjct: 1 MGHLGF-LAAALLSLLNFVHG-SLGPWTNAHATFYGGGDASGTMGGACGYGNLNSQGYGI 58
Query: 183 NTAALSTALFNSGLSCGACFQIKCVNDPQWCLPGSIVVTATNFCPPGGWCDPPNHHFDLS 362
NTAALSTALF++GLSCGAC+++KCV+DPQWCLPGSIVVTATNFCPPGGWCDPPNHHFDLS
Sbjct: 59 NTAALSTALFDNGLSCGACYELKCVSDPQWCLPGSIVVTATNFCPPGGWCDPPNHHFDLS 118
Query: 363 QPIFQHIAQYKAGIVPVAYRRVQ 431
QPIFQHIAQY+AGIVPV YRRV+
Sbjct: 119 QPIFQHIAQYRAGIVPVMYRRVK 141
Score = 167 bits (423), Expect(2) = e-108
Identities = 76/85 (89%), Positives = 83/85 (97%)
Frame = +1
Query: 430 RCRRKDGIRFTINGHSYFNLVLVTNVGGAGDVHAVAIKGSRTRWQAMSRNWGQNWQSNSY 609
+CRR GIRFTINGHSYFNLVL+TNVGGAGDVH+V+IKGS+TRWQAMSRNWGQNWQSNSY
Sbjct: 141 KCRRSGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSKTRWQAMSRNWGQNWQSNSY 200
Query: 610 LNGQSLSFVVTTSNGHSVVSFNVAP 684
LNGQSLSF+VTTSNGHSVVSF+VAP
Sbjct: 201 LNGQSLSFIVTTSNGHSVVSFDVAP 225
>gb|AAG13983.1|AF297522_1 expansin 2 [Prunus avium]
Length = 252
Score = 245 bits (625), Expect(2) = e-104
Identities = 111/153 (72%), Positives = 128/153 (83%), Gaps = 9/153 (5%)
Frame = +3
Query: 12 LGF*FCL-GIFSFVSHVNGYGYGGWTNAHATFYGGSDASGTMGGACGYGNLISQGYGTNT 188
L + FCL G+ + VS + YG GGW +A ATFYGGSDASGTMGGACGYGNL SQGYGTNT
Sbjct: 5 LAYGFCLVGLLAMVSCAHAYGGGGWVDARATFYGGSDASGTMGGACGYGNLYSQGYGTNT 64
Query: 189 AALSTALFNSGLSCGACFQIKCVNDPQWCLPGSIVVTATNFCPP--------GGWCDPPN 344
AALSTALFN+GL CG+C++I+CVNDP+WCLPG+IVVTATNFCPP GGWC+PP
Sbjct: 65 AALSTALFNNGLGCGSCYEIRCVNDPKWCLPGAIVVTATNFCPPNNALPNNAGGWCNPPQ 124
Query: 345 HHFDLSQPIFQHIAQYKAGIVPVAYRRVQMQEK 443
HHFDLSQP+FQHIAQYKAG+VPVAYRRV + +
Sbjct: 125 HHFDLSQPVFQHIAQYKAGVVPVAYRRVPCRRR 157
Score = 156 bits (395), Expect(2) = e-104
Identities = 71/84 (84%), Positives = 79/84 (93%)
Frame = +1
Query: 433 CRRKDGIRFTINGHSYFNLVLVTNVGGAGDVHAVAIKGSRTRWQAMSRNWGQNWQSNSYL 612
CRR+ GIRFTINGHSYFNLVL+TNVGGAGDVH+V++KGSRT WQAMSRNWGQNWQSNSYL
Sbjct: 154 CRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSVSVKGSRTGWQAMSRNWGQNWQSNSYL 213
Query: 613 NGQSLSFVVTTSNGHSVVSFNVAP 684
NGQSLSF VTTS+G +VVS+N AP
Sbjct: 214 NGQSLSFKVTTSDGRTVVSYNAAP 237
>gb|AAL40354.1|AF448467_1 alpha-expansin [Prunus cerasus]
Length = 252
Score = 245 bits (626), Expect(2) = e-104
Identities = 111/153 (72%), Positives = 127/153 (82%), Gaps = 9/153 (5%)
Frame = +3
Query: 12 LGF*FCL-GIFSFVSHVNGYGYGGWTNAHATFYGGSDASGTMGGACGYGNLISQGYGTNT 188
L + FCL G+ + VS + YG GGW NA ATFYGG DASGTMGGACGYGNL SQGYGTNT
Sbjct: 5 LAYGFCLVGLLAMVSCAHAYGGGGWVNARATFYGGGDASGTMGGACGYGNLYSQGYGTNT 64
Query: 189 AALSTALFNSGLSCGACFQIKCVNDPQWCLPGSIVVTATNFCPP--------GGWCDPPN 344
AALSTALFN+GL CG+C++I+CVNDP+WCLPG+IVVTATNFCPP GGWC+PP
Sbjct: 65 AALSTALFNNGLGCGSCYEIRCVNDPKWCLPGAIVVTATNFCPPNNALPNNAGGWCNPPQ 124
Query: 345 HHFDLSQPIFQHIAQYKAGIVPVAYRRVQMQEK 443
HHFDLSQP+FQHIAQYKAG+VPVAYRRV + +
Sbjct: 125 HHFDLSQPVFQHIAQYKAGVVPVAYRRVPCRRR 157
Score = 155 bits (392), Expect(2) = e-104
Identities = 70/84 (83%), Positives = 79/84 (93%)
Frame = +1
Query: 433 CRRKDGIRFTINGHSYFNLVLVTNVGGAGDVHAVAIKGSRTRWQAMSRNWGQNWQSNSYL 612
CRR+ GIRFTINGHSYFNLVL+TNVGGAGDVH+V++KGSRT WQAMSRNWGQNWQSNSYL
Sbjct: 154 CRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSVSVKGSRTGWQAMSRNWGQNWQSNSYL 213
Query: 613 NGQSLSFVVTTSNGHSVVSFNVAP 684
NGQSLSF VTTS+G +VV++N AP
Sbjct: 214 NGQSLSFKVTTSDGRTVVAYNAAP 237
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 702,513,923
Number of Sequences: 1393205
Number of extensions: 17653008
Number of successful extensions: 66640
Number of sequences better than 10.0: 473
Number of HSP's better than 10.0 without gapping: 51444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62640
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30835865868
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
