Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005314A_C02 KMC005314A_c02
(568 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T50662 UVB-resistance protein UVR8 [imported] - Arabidopsis... 135 5e-31
ref|NP_201191.1| UVB-resistance protein UVR8 (gb|AAD43920.1); pr... 135 5e-31
emb|CAD40810.1| OSJNBa0006B20.1 [Oryza sativa (japonica cultivar... 88 6e-17
ref|NP_197443.1| putative protein; protein id: At5g19420.1 [Arab... 52 5e-06
ref|NP_568268.1| putative protein; protein id: At5g12350.1 [Arab... 52 5e-06
>pir||T50662 UVB-resistance protein UVR8 [imported] - Arabidopsis thaliana
gi|5478530|gb|AAD43920.1|AF130441_1 UVB-resistance
protein UVR8 [Arabidopsis thaliana]
Length = 440
Score = 135 bits (339), Expect = 5e-31
Identities = 69/103 (66%), Positives = 82/103 (78%)
Frame = -1
Query: 568 IAVTERANVYSWGRGTNGQLGQGDTVDRNSPKIIEALSVDGSCGQHIESSNTDQISGKSL 389
+AVTER NV++WGRGTNGQLG G++VDRN PKIIEALSVDG+ GQHIESSN D SGKS
Sbjct: 341 LAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVDGASGQHIESSNIDPSSGKSW 400
Query: 388 SSLSERYAVVPDETQVSGQTANPGNGDRFDLSVPESDVKRIRV 260
S +ERYAVVPDET G T G+ D+SVP++DVKR+R+
Sbjct: 401 VSPAERYAVVPDET---GLTDGSSKGNGGDISVPQTDVKRVRI 440
Score = 48.1 bits (113), Expect = 7e-05
Identities = 35/99 (35%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Frame = -1
Query: 568 IAVTERANVYSWGRGTNGQLGQGDTVDRNSPKIIEALSVDGSCGQHIESSNTDQISGKSL 389
+AVT V SWGR NGQLG GDT D P+ I+A + I K +
Sbjct: 133 LAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAF---------------EGIPIKMV 177
Query: 388 SSLSERYAVVPDETQVS----GQTANPGNGDRFDLSVPE 284
++ +E A V ++ + G+ N G GDR D VPE
Sbjct: 178 AAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPE 216
Score = 40.4 bits (93), Expect = 0.015
Identities = 21/40 (52%), Positives = 24/40 (59%), Gaps = 4/40 (10%)
Frame = -1
Query: 544 VYSWGRGTNGQLGQGDTVDRNSPKIIEALS----VDGSCG 437
V SWGRG +GQLG GD DR SP + AL V +CG
Sbjct: 36 VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG 75
Score = 32.0 bits (71), Expect = 5.5
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -1
Query: 544 VYSWGRGTNGQLGQGDTVDRNSPKIIEAL 458
VYSWG G G+LG G++ D +P I+AL
Sbjct: 89 VYSWGWGDFGRLGHGNSSDLFTPLPIKAL 117
Score = 31.2 bits (69), Expect = 9.4
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -1
Query: 568 IAVTERANVYSWGRGTNGQLGQGDTVDRNSPKIIEALS 455
I+V+ +Y++G GQLG GD D P +EALS
Sbjct: 237 ISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALS 274
>ref|NP_201191.1| UVB-resistance protein UVR8 (gb|AAD43920.1); protein id:
At5g63860.1, supported by cDNA: gi_5478529 [Arabidopsis
thaliana] gi|10177674|dbj|BAB11034.1| UVB-resistance
protein UVR8 [Arabidopsis thaliana]
gi|21928123|gb|AAM78089.1| AT5g63860/MGI19_6
[Arabidopsis thaliana] gi|23308399|gb|AAN18169.1|
At5g63860/MGI19_6 [Arabidopsis thaliana]
Length = 440
Score = 135 bits (339), Expect = 5e-31
Identities = 69/103 (66%), Positives = 82/103 (78%)
Frame = -1
Query: 568 IAVTERANVYSWGRGTNGQLGQGDTVDRNSPKIIEALSVDGSCGQHIESSNTDQISGKSL 389
+AVTER NV++WGRGTNGQLG G++VDRN PKIIEALSVDG+ GQHIESSN D SGKS
Sbjct: 341 LAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVDGASGQHIESSNIDPSSGKSW 400
Query: 388 SSLSERYAVVPDETQVSGQTANPGNGDRFDLSVPESDVKRIRV 260
S +ERYAVVPDET G T G+ D+SVP++DVKR+R+
Sbjct: 401 VSPAERYAVVPDET---GLTDGSSKGNGGDISVPQTDVKRVRI 440
Score = 48.1 bits (113), Expect = 7e-05
Identities = 35/99 (35%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Frame = -1
Query: 568 IAVTERANVYSWGRGTNGQLGQGDTVDRNSPKIIEALSVDGSCGQHIESSNTDQISGKSL 389
+AVT V SWGR NGQLG GDT D P+ I+A + I K +
Sbjct: 133 LAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAF---------------EGIRIKMV 177
Query: 388 SSLSERYAVVPDETQVS----GQTANPGNGDRFDLSVPE 284
++ +E A V ++ + G+ N G GDR D VPE
Sbjct: 178 AAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPE 216
Score = 40.4 bits (93), Expect = 0.015
Identities = 21/40 (52%), Positives = 24/40 (59%), Gaps = 4/40 (10%)
Frame = -1
Query: 544 VYSWGRGTNGQLGQGDTVDRNSPKIIEALS----VDGSCG 437
V SWGRG +GQLG GD DR SP + AL V +CG
Sbjct: 36 VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG 75
Score = 32.0 bits (71), Expect = 5.5
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -1
Query: 544 VYSWGRGTNGQLGQGDTVDRNSPKIIEAL 458
VYSWG G G+LG G++ D +P I+AL
Sbjct: 89 VYSWGWGDFGRLGHGNSSDLFTPLPIKAL 117
Score = 31.2 bits (69), Expect = 9.4
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -1
Query: 568 IAVTERANVYSWGRGTNGQLGQGDTVDRNSPKIIEALS 455
I+V+ +Y++G GQLG GD D P +EALS
Sbjct: 237 ISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALS 274
>emb|CAD40810.1| OSJNBa0006B20.1 [Oryza sativa (japonica cultivar-group)]
Length = 449
Score = 88.2 bits (217), Expect = 6e-17
Identities = 54/104 (51%), Positives = 69/104 (65%), Gaps = 1/104 (0%)
Frame = -1
Query: 568 IAVTERANVYSWGRGTNGQLGQGDTVDRNSPKIIEALSVDGSCGQHIESSNTDQISGKSL 389
+A TE+ NV+SWGRGT+GQLG G+ VD N P +I+ALS DG + +E S + K
Sbjct: 348 LAFTEKKNVFSWGRGTSGQLGHGEIVD-NKPVMIDALSPDGPGCKKLEPSTAVPFA-KVW 405
Query: 388 SSLSERYAVVPDE-TQVSGQTANPGNGDRFDLSVPESDVKRIRV 260
S SERYA+VPDE SG+ GNG D +VPE+DVKR+RV
Sbjct: 406 VSPSERYAIVPDEKVPNSGEGTARGNG--ADANVPENDVKRMRV 447
Score = 39.7 bits (91), Expect = 0.026
Identities = 34/99 (34%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Frame = -1
Query: 568 IAVTERANVYSWGRGTNGQLGQGDTVDRNSPKIIEALSVDGSCGQHIESSNTDQISGKSL 389
+AVT V WGR NGQLG G T D P+ I+ S +G C K +
Sbjct: 141 LAVTMAGEV-QWGRNQNGQLGLGTTEDSLLPQKIQ--SFEGVC-------------VKMI 184
Query: 388 SSLSERYAVVPDETQVS----GQTANPGNGDRFDLSVPE 284
++ +E A V ++ + G+ N G GDR D VPE
Sbjct: 185 AAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRNDRLVPE 223
Score = 35.8 bits (81), Expect = 0.38
Identities = 19/40 (47%), Positives = 24/40 (59%)
Frame = -1
Query: 565 AVTERANVYSWGRGTNGQLGQGDTVDRNSPKIIEALSVDG 446
AVTE ++Y WG G G LG GD DR P+ + SV+G
Sbjct: 193 AVTEDGDLYGWGWGRYGNLGLGDRNDRLVPEKVS--SVEG 230
Score = 35.4 bits (80), Expect = 0.50
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = -1
Query: 538 SWGRGTNGQLGQGDTVDRNSPKII 467
SWGRG +GQLG GD DR P ++
Sbjct: 44 SWGRGEDGQLGHGDAEDRLVPTVL 67
Score = 32.7 bits (73), Expect = 3.2
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -1
Query: 556 ERANVYSWGRGTNGQLGQGDTVDRNSPKIIEAL 458
+ VYSWG G G+LG G++ D +P+ ++AL
Sbjct: 93 DEQQVYSWGWGDFGRLGHGNSSDVFTPQPVKAL 125
Score = 32.0 bits (71), Expect = 5.5
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = -1
Query: 568 IAVTERANVYSWGRGTNGQLGQGDTVDRNSPKIIEALSVDGSCGQHIESSNTDQISG 398
I V+ ++Y++G GQLG GD D P +EAL + S+ QISG
Sbjct: 244 ITVSSSGSLYTYGWSKYGQLGHGDFEDHLVPHKLEAL----------KDSSISQISG 290
>ref|NP_197443.1| putative protein; protein id: At5g19420.1 [Arabidopsis thaliana]
Length = 1121
Score = 52.0 bits (123), Expect = 5e-06
Identities = 20/35 (57%), Positives = 28/35 (79%)
Frame = -1
Query: 562 VTERANVYSWGRGTNGQLGQGDTVDRNSPKIIEAL 458
+T R VY+WG+G+NG+LG GD DRNSP ++E+L
Sbjct: 616 LTSRTEVYTWGKGSNGRLGHGDADDRNSPTLVESL 650
Score = 35.8 bits (81), Expect = 0.38
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = -1
Query: 568 IAVTERANVYSWGRGTNGQLGQGDTVDRNSPKIIEALSVDG----SCGQH 431
+ VT++ +SWG + G+LG G + PK+I+AL+ +CG++
Sbjct: 341 VLVTKQGESFSWGEESEGRLGHGVDSNVQHPKLIDALNTTNIELVACGEY 390
Score = 33.1 bits (74), Expect = 2.5
Identities = 26/93 (27%), Positives = 40/93 (42%)
Frame = -1
Query: 565 AVTERANVYSWGRGTNGQLGQGDTVDRNSPKIIEALSVDGSCGQHIESSNTDQISGKSLS 386
AVT ++Y+WG+G G LG G+ V PK + L G H+ S ++
Sbjct: 394 AVTLSGDLYTWGKGDFGILGHGNEVSHWVPKRVNFLME----GIHVSSIACGPYHTAVVT 449
Query: 385 SLSERYAVVPDETQVSGQTANPGNGDRFDLSVP 287
S + + T G G+GDR + +P
Sbjct: 450 SAGQLF------TFGDGTFGVLGHGDRKSVFIP 476
>ref|NP_568268.1| putative protein; protein id: At5g12350.1 [Arabidopsis thaliana]
gi|14586365|emb|CAC42896.1| putative protein
[Arabidopsis thaliana]
Length = 1062
Score = 52.0 bits (123), Expect = 5e-06
Identities = 20/35 (57%), Positives = 28/35 (79%)
Frame = -1
Query: 562 VTERANVYSWGRGTNGQLGQGDTVDRNSPKIIEAL 458
+T R VY+WG+G+NG+LG GD DRNSP ++E+L
Sbjct: 583 LTSRTEVYTWGKGSNGRLGHGDVDDRNSPTLVESL 617
Score = 35.4 bits (80), Expect = 0.50
Identities = 16/49 (32%), Positives = 28/49 (56%), Gaps = 4/49 (8%)
Frame = -1
Query: 568 IAVTERANVYSWGRGTNGQLGQGDTVDRNSPKIIEALSVDG----SCGQ 434
+ VT++ +SWG + G+LG G + PK+I+AL+ +CG+
Sbjct: 308 VLVTKQGESFSWGEESEGRLGHGVDSNIQQPKLIDALNTTNIELVACGE 356
Score = 33.1 bits (74), Expect = 2.5
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Frame = -1
Query: 565 AVTERANVYSWGRGTNGQLGQGDTVDRNSPK----IIEALSVDG-SCGQH 431
AVT ++Y+WG+G G LG G+ V PK ++E + V +CG +
Sbjct: 361 AVTLSGDLYTWGKGDFGVLGHGNEVSHWVPKRVNFLLEGIHVSSIACGPY 410
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 464,419,245
Number of Sequences: 1393205
Number of extensions: 9474087
Number of successful extensions: 22717
Number of sequences better than 10.0: 205
Number of HSP's better than 10.0 without gapping: 21464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22691
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
