Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005309A_C01 KMC005309A_c01
(585 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO14627.1|AF467900_4 hypothetical protein [Prunus persica] 60 3e-08
gb|AAL77659.1| AT3g27230/K17E12_5 [Arabidopsis thaliana] 57 1e-07
ref|NP_566813.1| expressed protein; protein id: At3g27230.1, sup... 57 1e-07
gb|AAK84481.1| unknown [Lycopersicon esculentum] 57 2e-07
ref|NP_198899.1| putative protein; protein id: At5g40830.1 [Arab... 56 4e-07
>gb|AAO14627.1|AF467900_4 hypothetical protein [Prunus persica]
Length = 421
Score = 59.7 bits (143), Expect = 3e-08
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = -1
Query: 585 NFFCAHAEKKPALTSSIEKFGYKKLKWVVGEKVDSFGSGNA 463
NF+C++ EKK LT IE+FGYKKLKWVVG+KVD+ SG +
Sbjct: 367 NFYCSNEEKKRDLTRLIERFGYKKLKWVVGDKVDAAASGKS 407
>gb|AAL77659.1| AT3g27230/K17E12_5 [Arabidopsis thaliana]
Length = 410
Score = 57.4 bits (137), Expect = 1e-07
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = -1
Query: 585 NFFCAHAEKKPALTSSIEKFGYKKLKWVVGEKVDS 481
NF+CA+ EKK LT IE+FGYKKLKWV+GEK D+
Sbjct: 362 NFYCANDEKKKELTRMIERFGYKKLKWVIGEKADA 396
>ref|NP_566813.1| expressed protein; protein id: At3g27230.1, supported by cDNA:
256351., supported by cDNA: gi_18700094 [Arabidopsis
thaliana] gi|9294216|dbj|BAB02118.1| contains similarity
to unknown protein~gb|AAB61017.1~gene_id:K17E12.5
[Arabidopsis thaliana]
Length = 410
Score = 57.4 bits (137), Expect = 1e-07
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = -1
Query: 585 NFFCAHAEKKPALTSSIEKFGYKKLKWVVGEKVDS 481
NF+CA+ EKK LT IE+FGYKKLKWV+GEK D+
Sbjct: 362 NFYCANDEKKKELTRMIERFGYKKLKWVIGEKADA 396
>gb|AAK84481.1| unknown [Lycopersicon esculentum]
Length = 340
Score = 56.6 bits (135), Expect = 2e-07
Identities = 24/37 (64%), Positives = 30/37 (80%)
Frame = -1
Query: 585 NFFCAHAEKKPALTSSIEKFGYKKLKWVVGEKVDSFG 475
NF C++ +KK ALT IE+FGYKKLKWVVGEK++ G
Sbjct: 284 NFLCSNEDKKTALTRLIERFGYKKLKWVVGEKINGSG 320
>ref|NP_198899.1| putative protein; protein id: At5g40830.1 [Arabidopsis thaliana]
gi|10177962|dbj|BAB11345.1|
emb|CAB80933.1~gene_id:MHK7.6~similar to unknown protein
[Arabidopsis thaliana] gi|27311741|gb|AAO00836.1|
putative protein [Arabidopsis thaliana]
Length = 414
Score = 55.8 bits (133), Expect = 4e-07
Identities = 24/35 (68%), Positives = 28/35 (79%)
Frame = -1
Query: 585 NFFCAHAEKKPALTSSIEKFGYKKLKWVVGEKVDS 481
NF+C + EKK LT IE+FGYKKLKWVVGEK D+
Sbjct: 366 NFYCGNDEKKRVLTRLIERFGYKKLKWVVGEKTDA 400
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 508,177,100
Number of Sequences: 1393205
Number of extensions: 10858891
Number of successful extensions: 22156
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 21726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22148
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
