Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005308A_C01 KMC005308A_c01
(541 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566804.1| hypothetical protein; protein id: At3g18524.1 [... 100 2e-20
ref|NP_198922.1| putative protein; protein id: At5g41060.1, supp... 39 0.031
gb|AAH42748.1| Unknown (protein for IMAGE:4502467) [Mus musculus] 37 0.20
ref|NP_663554.1| Myb protein P42POP [Mus musculus] gi|19070822|g... 37 0.20
ref|XP_218404.1| similar to Myb protein P42POP [Mus musculus] [R... 36 0.34
>ref|NP_566804.1| hypothetical protein; protein id: At3g18524.1 [Arabidopsis
thaliana]
Length = 443
Score = 99.8 bits (247), Expect = 2e-20
Identities = 48/79 (60%), Positives = 60/79 (75%), Gaps = 2/79 (2%)
Frame = -2
Query: 531 DHSEGELTG--RPAVKDGEFGELSPEIRTTVDGRGDGAGIHPRRSSWGRKSGNWELSPDV 358
DH +G+ R VKDGE GELSP+IR TVD + D +HPRRSSWGRKSG+W++SP+V
Sbjct: 354 DHGDGKHGNNERLHVKDGELGELSPDIRATVDEQSDRPSMHPRRSSWGRKSGSWDMSPEV 413
Query: 357 LALAERSGDSNRVGGGSSS 301
+ALA R G+ N+ GGGSSS
Sbjct: 414 MALAARVGEQNQNGGGSSS 432
>ref|NP_198922.1| putative protein; protein id: At5g41060.1, supported by cDNA:
gi_15028350, supported by cDNA: gi_19310652 [Arabidopsis
thaliana] gi|9759152|dbj|BAB09708.1|
emb|CAB87904.1~gene_id:MEE6.13~strong similarity to
unknown protein [Arabidopsis thaliana]
gi|15028351|gb|AAK76652.1| unknown protein [Arabidopsis
thaliana] gi|19310653|gb|AAL85057.1| unknown protein
[Arabidopsis thaliana]
Length = 410
Score = 39.3 bits (90), Expect = 0.031
Identities = 24/66 (36%), Positives = 35/66 (52%), Gaps = 2/66 (3%)
Frame = -2
Query: 531 DHSEGELTGRPAVKDGEFGELSPEIRTTVDG--RGDGAGIHPRRSSWGRKSGNWELSPDV 358
D +G R V D E ELSP++ V+G + + HPR + NWE+SP+V
Sbjct: 350 DGKDGNNNERFHVNDNELNELSPDMGNIVNGDEQINRPNNHPRNA-------NWEMSPEV 402
Query: 357 LALAER 340
+AL+ R
Sbjct: 403 MALSAR 408
>gb|AAH42748.1| Unknown (protein for IMAGE:4502467) [Mus musculus]
Length = 268
Score = 36.6 bits (83), Expect = 0.20
Identities = 19/65 (29%), Positives = 36/65 (55%)
Frame = +2
Query: 332 SPDLSAKARTSGDNSQFPLFLPQLDLLGCIPAPSPRPSTVVLISGDSSPNSPSLTAGRPV 511
+P + + ++ + P+ LP+L L +PAP P P+ + + +P+SPS T RP
Sbjct: 67 NPQEAKERESTSPAAMQPVQLPRLALSPPLPAPPPPPTALAQV----APSSPSPTPPRPT 122
Query: 512 NSPSE 526
++P +
Sbjct: 123 SAPEQ 127
>ref|NP_663554.1| Myb protein P42POP [Mus musculus]
gi|19070822|gb|AAL83995.1|AF364868_1 Myb protein P42POP
[Mus musculus]
Length = 393
Score = 36.6 bits (83), Expect = 0.20
Identities = 19/65 (29%), Positives = 36/65 (55%)
Frame = +2
Query: 332 SPDLSAKARTSGDNSQFPLFLPQLDLLGCIPAPSPRPSTVVLISGDSSPNSPSLTAGRPV 511
+P + + ++ + P+ LP+L L +PAP P P+ + + +P+SPS T RP
Sbjct: 192 NPQEAKERESTSPAAMQPVQLPRLALSPPLPAPPPPPTALAQV----APSSPSPTPPRPT 247
Query: 512 NSPSE 526
++P +
Sbjct: 248 SAPEQ 252
>ref|XP_218404.1| similar to Myb protein P42POP [Mus musculus] [Rattus norvegicus]
Length = 340
Score = 35.8 bits (81), Expect = 0.34
Identities = 18/48 (37%), Positives = 29/48 (59%)
Frame = +2
Query: 383 PLFLPQLDLLGCIPAPSPRPSTVVLISGDSSPNSPSLTAGRPVNSPSE 526
P+ LP+L L +PAP P P+ + + +P+SPS T RP ++P +
Sbjct: 157 PVQLPRLALSPPLPAPPPPPTALAQV----APSSPSPTPPRPTSAPEQ 200
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 465,765,601
Number of Sequences: 1393205
Number of extensions: 10531337
Number of successful extensions: 33566
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 30989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33380
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
