Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005307A_C01 KMC005307A_c01
(499 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK91416.1| At1g62020/F8K4_21 [Arabidopsis thaliana] gi|24111... 74 1e-12
ref|NP_176393.1| coatomer alpha subunit, putative; protein id: A... 74 1e-12
ref|NP_179734.1| coatomer alpha subunit; protein id: At2g21390.1... 71 8e-12
gb|AAK18834.1|AC082645_4 putative alpha-coat protein [Oryza sativa] 70 1e-11
gb|AAK18837.1|AC082645_7 putative alpha-coat protein [Oryza sativa] 70 1e-11
>gb|AAK91416.1| At1g62020/F8K4_21 [Arabidopsis thaliana] gi|24111357|gb|AAN46802.1|
At1g62020/F8K4_21 [Arabidopsis thaliana]
Length = 495
Score = 73.6 bits (179), Expect = 1e-12
Identities = 32/42 (76%), Positives = 37/42 (87%)
Frame = -1
Query: 499 VSCPYGTSRFVPSPEGQLCAVCDLSVVGADASGLLCSPSPVR 374
VSCPY T+RFVP+ EG +C VCDL+V+GADASGLLCSPS VR
Sbjct: 454 VSCPYCTARFVPNQEGNICTVCDLAVIGADASGLLCSPSQVR 495
>ref|NP_176393.1| coatomer alpha subunit, putative; protein id: At1g62020.1
[Arabidopsis thaliana] gi|7444289|pir||T02146 coatomer
complex alpha chain homolog F8K4.21 - Arabidopsis
thaliana gi|3367534|gb|AAC28519.1| Strong similarity to
coatamer alpha subunit (HEPCOP) homolog gb|U24105 from
Homo sapiens. [Arabidopsis thaliana]
Length = 1216
Score = 73.6 bits (179), Expect = 1e-12
Identities = 32/42 (76%), Positives = 37/42 (87%)
Frame = -1
Query: 499 VSCPYGTSRFVPSPEGQLCAVCDLSVVGADASGLLCSPSPVR 374
VSCPY T+RFVP+ EG +C VCDL+V+GADASGLLCSPS VR
Sbjct: 1175 VSCPYCTARFVPNQEGNICTVCDLAVIGADASGLLCSPSQVR 1216
>ref|NP_179734.1| coatomer alpha subunit; protein id: At2g21390.1 [Arabidopsis
thaliana] gi|25301669|pir||F84600 coatomer alpha subunit
[imported] - Arabidopsis thaliana
gi|4567286|gb|AAD23699.1| coatomer alpha subunit
[Arabidopsis thaliana]
Length = 1218
Score = 70.9 bits (172), Expect = 8e-12
Identities = 31/42 (73%), Positives = 37/42 (87%)
Frame = -1
Query: 499 VSCPYGTSRFVPSPEGQLCAVCDLSVVGADASGLLCSPSPVR 374
V+CPY T+RFVPS EG +C+VCDL+V+GADASGLLCS S VR
Sbjct: 1177 VACPYCTARFVPSQEGNICSVCDLAVIGADASGLLCSASQVR 1218
>gb|AAK18834.1|AC082645_4 putative alpha-coat protein [Oryza sativa]
Length = 1218
Score = 70.1 bits (170), Expect = 1e-11
Identities = 32/42 (76%), Positives = 36/42 (85%)
Frame = -1
Query: 499 VSCPYGTSRFVPSPEGQLCAVCDLSVVGADASGLLCSPSPVR 374
VSCPY SRFVPS EGQLC +C+L+VVGADASGLLCSP+ R
Sbjct: 1177 VSCPYCGSRFVPSIEGQLCTICELAVVGADASGLLCSPTQSR 1218
>gb|AAK18837.1|AC082645_7 putative alpha-coat protein [Oryza sativa]
Length = 1218
Score = 70.1 bits (170), Expect = 1e-11
Identities = 31/42 (73%), Positives = 37/42 (87%)
Frame = -1
Query: 499 VSCPYGTSRFVPSPEGQLCAVCDLSVVGADASGLLCSPSPVR 374
VSCPY SRFVPS EGQLC +C+L+VVGADASGL+CSP+ +R
Sbjct: 1177 VSCPYCGSRFVPSIEGQLCTICELAVVGADASGLVCSPTQLR 1218
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 428,042,825
Number of Sequences: 1393205
Number of extensions: 9255225
Number of successful extensions: 31781
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 26060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30308
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
