>KMC005305A_C01 KMC005305A_c01
gaatggaaagaaaaatcactatttttacatcgatataactagtaaatgtttgatctttac
acaagaaattaaattcatccAAGAGCATGGTAAAGAAGTACACAACCTCACTTCAAGAAT
GCTTACACATTTCAACAAAGAACTAATAATGCTTAGTGACTTGAATCATCATGATCCATA
TCTTTTACATAATGATCAAAACTTTTGGATAAGCATCGTGGTTGTGACTTAACAATCAAT
AGAAATGCAAGATCCAGAGAGTGGCTGCACTGTCAACTTCTACTCACAAATGGATCAATC
TTAACCCAGAGCAAGGGAGAAGACAGAGGCCAGAAGCACTGACCACAGAATAACCAGGGT
TGGAGTACGGGTCTGGCGACCCATGAGACCTTGGAGGAAGGGATAGAGATGAAAAATCAC
CCAGAAGGCAAAGAAACCTTTTCCAGTGAGCTGGTCCCCAAGATTCATATCCTCCATGGA
GTGCATCAGAAAATCCAGCAACAACACCATCCATGTTAACAAGGATAAGGGTCGTCGGAG
GAATCAAAAGTGTAGTCCATTGGATGATGTCTAG

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC005305A_C01 KMC005305A_c01
         (574 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T10797 cellulose synthase (EC 2.4.1.-) catalytic chain celA...    87  2e-32
gb|AAL37718.1|AF413210_1 cellulose synthase A4 [Gossypium hirsutum]    83  4e-32
dbj|BAB67900.1| putative cellulose synthase [Oryza sativa (japon...    82  2e-31
gb|AAK08700.1|AF267742_1 cellulose synthase catalytic subunit [A...    86  3e-31
ref|NP_567564.1| cellulose synthase - like protein; protein id: ...    86  3e-31

>pir||T10797 cellulose synthase (EC 2.4.1.-) catalytic chain celA1 - upland cotton
            gi|1706956|gb|AAB37766.1| cellulose synthase
          Length = 974

 Score = 87.0 bits (214), Expect(2) = 2e-32
 Identities = 47/82 (57%), Positives = 54/82 (65%), Gaps = 9/82 (10%)
 Frame = -2

Query: 450  LTGKGFFAFWVIFHLYPFLQGLMGRQTRTPTLVILWSVLLASVFSLALG*D*SICE*KLT 271
            L GK FF+FWVI HLYPFL+GLMGRQ RTPT+V+LWSVLLASVFSL            + 
Sbjct: 903  LFGKVFFSFWVILHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVW----------VR 952

Query: 270  VQP---------LSGSCISIDC 232
            + P         +S SCISIDC
Sbjct: 953  INPFVSTADSTTVSQSCISIDC 974

 Score = 73.9 bits (180), Expect(2) = 2e-32
 Identities = 34/47 (72%), Positives = 40/47 (84%)
 Frame = -1

Query: 574  LDIIQWTTLLIPPTTLILVNMDGVVAGFSDALHGGYESWGPAHWKRF 434
            L I++WTTLLIPPTTL++VNM GVVAGFSDAL+ GYE+WGP   K F
Sbjct: 862  LYIVKWTTLLIPPTTLLIVNMVGVVAGFSDALNKGYEAWGPLFGKVF 908

>gb|AAL37718.1|AF413210_1 cellulose synthase A4 [Gossypium hirsutum]
          Length = 974

 Score = 83.2 bits (204), Expect(3) = 4e-32
 Identities = 38/46 (82%), Positives = 42/46 (90%)
 Frame = -2

Query: 450  LTGKGFFAFWVIFHLYPFLQGLMGRQTRTPTLVILWSVLLASVFSL 313
            L GK FF+FWVI HLYPFL+GLMGRQ RTPT+V+LWSVLLASVFSL
Sbjct: 903  LFGKVFFSFWVILHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSL 948

 Score = 73.9 bits (180), Expect(3) = 4e-32
 Identities = 34/47 (72%), Positives = 40/47 (84%)
 Frame = -1

Query: 574  LDIIQWTTLLIPPTTLILVNMDGVVAGFSDALHGGYESWGPAHWKRF 434
            L I++WTTLLIPPTTL++VNM GVVAGFSDAL+ GYE+WGP   K F
Sbjct: 862  LYIVKWTTLLIPPTTLLIVNMVGVVAGFSDALNKGYEAWGPLFGKVF 908

 Score = 23.1 bits (48), Expect(3) = 4e-32
 Identities = 8/11 (72%), Positives = 11/11 (99%)
 Frame = -3

Query: 314 LLWVKIDPFVS 282
           L+WV+I+PFVS
Sbjct: 948 LVWVRINPFVS 958

>dbj|BAB67900.1| putative cellulose synthase [Oryza sativa (japonica cultivar-group)]
          Length = 939

 Score = 82.0 bits (201), Expect(3) = 2e-31
 Identities = 38/46 (82%), Positives = 41/46 (88%)
 Frame = -2

Query: 450  LTGKGFFAFWVIFHLYPFLQGLMGRQTRTPTLVILWSVLLASVFSL 313
            L GK FFA WVI HLYPFL+GLMGRQ RTPT+V+LWSVLLASVFSL
Sbjct: 869  LFGKVFFAMWVIMHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSL 914

 Score = 68.9 bits (167), Expect(3) = 2e-31
 Identities = 29/50 (58%), Positives = 40/50 (80%)
 Frame = -1

Query: 574 LDIIQWTTLLIPPTTLILVNMDGVVAGFSDALHGGYESWGPAHWKRFLCL 425
           L + +WTT+LIPPT+++++N+ GVVAGFSDAL+ GYESWGP   K F  +
Sbjct: 828 LYVFKWTTVLIPPTSILVLNLVGVVAGFSDALNSGYESWGPLFGKVFFAM 877

 Score = 26.6 bits (57), Expect(3) = 2e-31
 Identities = 10/13 (76%), Positives = 11/13 (83%)
 Frame = -3

Query: 314 LLWVKIDPFVSRS 276
           LLWVKIDPF+  S
Sbjct: 914 LLWVKIDPFIGSS 926

>gb|AAK08700.1|AF267742_1 cellulose synthase catalytic subunit [Arabidopsis thaliana]
          Length = 985

 Score = 85.9 bits (211), Expect(2) = 3e-31
 Identities = 46/73 (63%), Positives = 51/73 (69%)
 Frame = -2

Query: 450  LTGKGFFAFWVIFHLYPFLQGLMGRQTRTPTLVILWSVLLASVFSLALG*D*SICE*KLT 271
            L GK FFAFWVI HLYPFL+GLMGRQ RTPT+VILWS+LLASVFSL           K  
Sbjct: 914  LFGKVFFAFWVILHLYPFLKGLMGRQNRTPTIVILWSILLASVFSLVWVRINPFVS-KTD 972

Query: 270  VQPLSGSCISIDC 232
               LS +C+ IDC
Sbjct: 973  TTSLSLNCLLIDC 985

 Score = 70.9 bits (172), Expect(2) = 3e-31
 Identities = 31/47 (65%), Positives = 40/47 (84%)
 Frame = -1

Query: 574  LDIIQWTTLLIPPTTLILVNMDGVVAGFSDALHGGYESWGPAHWKRF 434
            L I++WTTLLIPPT+L+++N+ GVVAGFSDAL+ GYE+WGP   K F
Sbjct: 873  LYIVKWTTLLIPPTSLLIINLVGVVAGFSDALNKGYEAWGPLFGKVF 919

>ref|NP_567564.1| cellulose synthase - like protein; protein id: At4g18780.1, supported
            by cDNA: gi_12836996, supported by cDNA: gi_20466339
            [Arabidopsis thaliana] gi|20466340|gb|AAM20487.1|
            cellulose synthase-like protein [Arabidopsis thaliana]
          Length = 985

 Score = 85.9 bits (211), Expect(2) = 3e-31
 Identities = 46/73 (63%), Positives = 51/73 (69%)
 Frame = -2

Query: 450  LTGKGFFAFWVIFHLYPFLQGLMGRQTRTPTLVILWSVLLASVFSLALG*D*SICE*KLT 271
            L GK FFAFWVI HLYPFL+GLMGRQ RTPT+VILWS+LLASVFSL           K  
Sbjct: 914  LFGKVFFAFWVILHLYPFLKGLMGRQNRTPTIVILWSILLASVFSLVWVRINPFVS-KTD 972

Query: 270  VQPLSGSCISIDC 232
               LS +C+ IDC
Sbjct: 973  TTSLSLNCLLIDC 985

 Score = 70.9 bits (172), Expect(2) = 3e-31
 Identities = 31/47 (65%), Positives = 40/47 (84%)
 Frame = -1

Query: 574  LDIIQWTTLLIPPTTLILVNMDGVVAGFSDALHGGYESWGPAHWKRF 434
            L I++WTTLLIPPT+L+++N+ GVVAGFSDAL+ GYE+WGP   K F
Sbjct: 873  LYIVKWTTLLIPPTSLLIINLVGVVAGFSDALNKGYEAWGPLFGKVF 919

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 526,332,858
Number of Sequences: 1393205
Number of extensions: 11897393
Number of successful extensions: 32460
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 31162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32447
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 MPD051f02_f AV773473 1 442 2 MPDL054c04_f AV779234 91 574

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