Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005303A_C01 KMC005303A_c01
(578 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P31593|GSA_TOBAC Glutamate-1-semialdehyde 2,1-aminomutase, ch... 150 1e-35
pir||S21455 glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8... 149 2e-35
sp|Q40147|GSA_LYCES Glutamate-1-semialdehyde 2,1-aminomutase, ch... 149 3e-35
ref|NP_190442.1| glutamate-1-semialdehyde aminotransferase; prot... 145 5e-34
gb|AAA79123.1| glutamate-1-semialdehyde aminotransferase 145 5e-34
>sp|P31593|GSA_TOBAC Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast precursor
(GSA) (Glutamate-1-semialdehyde aminotransferase)
(GSA-AT) gi|100331|pir||S21454 glutamate-1-semialdehyde
2,1-aminomutase (EC 5.4.3.8) - common tobacco
gi|19873|emb|CAA46786.1| glutamate-1-semialdehyde
2,1-aminomutase [Nicotiana tabacum]
Length = 478
Score = 150 bits (378), Expect = 1e-35
Identities = 93/160 (58%), Positives = 103/160 (64%), Gaps = 6/160 (3%)
Frame = +2
Query: 116 GTLPRLPSHPRRPTRTPS---ITMAVSADPKTSTKLILRKSEEAFAAAKESMPGGVNVTC 286
G P+L P TPS I M S D K T L+KSEEAF+ AKE MPGGVN
Sbjct: 18 GQRPKLVFSPSPRRCTPSSSTIKMTASVDEKKKT-FTLQKSEEAFSKAKELMPGGVNSPV 76
Query: 287 SCLQICGWTA---NSY*LSQRMVACGTWMAMSTLTTLGAWGPAIIGHADDQVLAALGETM 457
+ G +S S+ G + +G+WGPAIIGHADD+VLAAL ETM
Sbjct: 77 RAFKSVGGQPIIIDSVKGSRMRDIDGN----EYIDYVGSWGPAIIGHADDEVLAALAETM 132
Query: 458 KKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEAC 577
KKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEAC
Sbjct: 133 KKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEAC 172
Score = 43.9 bits (102), Expect(2) = 5e-08
Identities = 20/21 (95%), Positives = 21/21 (99%)
Frame = +3
Query: 279 SPVRAFKSVGGQPILIDSVKG 341
SPVRAFKSVGGQPI+IDSVKG
Sbjct: 74 SPVRAFKSVGGQPIIIDSVKG 94
Score = 34.7 bits (78), Expect(2) = 5e-08
Identities = 15/26 (57%), Positives = 18/26 (68%)
Frame = +1
Query: 322 LLTQSKDGRMWDMDGNEYIDYVGCVG 399
++ K RM D+DGNEYIDYVG G
Sbjct: 88 IIDSVKGSRMRDIDGNEYIDYVGSWG 113
>pir||S21455 glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8) - common
tobacco gi|19875|emb|CAA46787.1|
glutamate-1-semialdehyde 2,1-aminomutase [Nicotiana
tabacum]
Length = 478
Score = 149 bits (376), Expect = 2e-35
Identities = 91/149 (61%), Positives = 101/149 (67%), Gaps = 4/149 (2%)
Frame = +2
Query: 143 PRRPTRTPS-ITMAVSADPKTSTKLILRKSEEAFAAAKESMPGGVNVTCSCLQICGWTA- 316
PRR T + S I M S D K T L+KSEEAF+ AKE MPGGVN + G
Sbjct: 29 PRRCTPSSSTIKMTASVDEKKKT-FTLQKSEEAFSKAKELMPGGVNSPVRAFKSVGGQPI 87
Query: 317 --NSY*LSQRMVACGTWMAMSTLTTLGAWGPAIIGHADDQVLAALGETMKKGTSFGAPCL 490
+S S+ G + +G+WGPAIIGHADD+VLAAL ETMKKGTSFGAPCL
Sbjct: 88 IIDSVKGSRMRDIDGN----DYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCL 143
Query: 491 LENTLAEMVISAVPSIEMVRFVNSGTEAC 577
LENTLAEMVISAVPSIEMVRFVNSGTEAC
Sbjct: 144 LENTLAEMVISAVPSIEMVRFVNSGTEAC 172
Score = 43.9 bits (102), Expect(2) = 1e-07
Identities = 20/21 (95%), Positives = 21/21 (99%)
Frame = +3
Query: 279 SPVRAFKSVGGQPILIDSVKG 341
SPVRAFKSVGGQPI+IDSVKG
Sbjct: 74 SPVRAFKSVGGQPIIIDSVKG 94
Score = 33.5 bits (75), Expect(2) = 1e-07
Identities = 14/26 (53%), Positives = 18/26 (68%)
Frame = +1
Query: 322 LLTQSKDGRMWDMDGNEYIDYVGCVG 399
++ K RM D+DGN+YIDYVG G
Sbjct: 88 IIDSVKGSRMRDIDGNDYIDYVGSWG 113
>sp|Q40147|GSA_LYCES Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast precursor
(GSA) (Glutamate-1-semialdehyde aminotransferase)
(GSA-AT) gi|7489005|pir||T07034 glutamate-1-semialdehyde
2,1-aminomutase (EC 5.4.3.8) - tomato
gi|642911|gb|AAA81881.1| glutamate 1-semialdehyde
2,1-aminomutase
Length = 481
Score = 149 bits (375), Expect = 3e-35
Identities = 92/154 (59%), Positives = 102/154 (65%), Gaps = 6/154 (3%)
Frame = +2
Query: 134 PSHPR-RPTRTPSIT--MAVSADPKTSTKLILRKSEEAFAAAKESMPGGVNVTCSCLQIC 304
PSH R P+ + S T M S D K T L KSEEAF+ AKE MPGGVN +
Sbjct: 27 PSHRRCNPSSSSSATIRMTASVDEKKKT-FTLEKSEEAFSKAKELMPGGVNSPVRAFKSV 85
Query: 305 GWTA---NSY*LSQRMVACGTWMAMSTLTTLGAWGPAIIGHADDQVLAALGETMKKGTSF 475
G +S S+ G + +G+WGPAIIGHADD+VLAAL ETMKKGTSF
Sbjct: 86 GGQPIIIDSVKGSRMRDIDGN----EYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSF 141
Query: 476 GAPCLLENTLAEMVISAVPSIEMVRFVNSGTEAC 577
GAPCLLENTLAEMVISAVPSIEMVRFVNSGTEAC
Sbjct: 142 GAPCLLENTLAEMVISAVPSIEMVRFVNSGTEAC 175
Score = 43.9 bits (102), Expect(2) = 5e-08
Identities = 20/21 (95%), Positives = 21/21 (99%)
Frame = +3
Query: 279 SPVRAFKSVGGQPILIDSVKG 341
SPVRAFKSVGGQPI+IDSVKG
Sbjct: 77 SPVRAFKSVGGQPIIIDSVKG 97
Score = 34.7 bits (78), Expect(2) = 5e-08
Identities = 15/26 (57%), Positives = 18/26 (68%)
Frame = +1
Query: 322 LLTQSKDGRMWDMDGNEYIDYVGCVG 399
++ K RM D+DGNEYIDYVG G
Sbjct: 91 IIDSVKGSRMRDIDGNEYIDYVGSWG 116
>ref|NP_190442.1| glutamate-1-semialdehyde aminotransferase; protein id: At3g48730.1
[Arabidopsis thaliana] gi|14195661|sp|Q42522|GSA2_ARATH
Glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplast
precursor (GSA 2) (Glutamate-1-semialdehyde
aminotransferase 2) (GSA-AT 2) gi|11258955|pir||T46217
glutamate-1-semialdehyde aminotransferase - Arabidopsis
thaliana gi|6523104|emb|CAB62362.1|
glutamate-1-semialdehyde aminotransferase [Arabidopsis
thaliana]
Length = 472
Score = 145 bits (365), Expect = 5e-34
Identities = 87/143 (60%), Positives = 98/143 (67%), Gaps = 7/143 (4%)
Frame = +2
Query: 170 ITMAVSADPKTSTKLILRKSEEAFAAAKESMPGGVNVTCSCLQICGWTANSY*LSQRMV- 346
I M+VS + KT K L+KSEEAF AAK MPGGVN + G Q +V
Sbjct: 33 IKMSVSVEEKTK-KFTLQKSEEAFNAAKNLMPGGVNSPVRAFKSVG--------GQPVVM 83
Query: 347 --ACGTWM----AMSTLTTLGAWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENTLA 508
A G+ + + +G+WGPAIIGHADD+VLAAL ETMKKGTSFGAPCLLEN LA
Sbjct: 84 DSAKGSRIRDIDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENVLA 143
Query: 509 EMVISAVPSIEMVRFVNSGTEAC 577
EMVISAVPSIEMVRFVNSGTEAC
Sbjct: 144 EMVISAVPSIEMVRFVNSGTEAC 166
Score = 42.4 bits (98), Expect(2) = 2e-07
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +3
Query: 252 RNRCPEVSTSPVRAFKSVGGQPILIDSVKG 341
+N P SPVRAFKSVGGQP+++DS KG
Sbjct: 59 KNLMPGGVNSPVRAFKSVGGQPVVMDSAKG 88
Score = 33.9 bits (76), Expect(2) = 2e-07
Identities = 14/26 (53%), Positives = 19/26 (72%)
Frame = +1
Query: 322 LLTQSKDGRMWDMDGNEYIDYVGCVG 399
++ +K R+ D+DGNEYIDYVG G
Sbjct: 82 VMDSAKGSRIRDIDGNEYIDYVGSWG 107
>gb|AAA79123.1| glutamate-1-semialdehyde aminotransferase
Length = 472
Score = 145 bits (365), Expect = 5e-34
Identities = 87/143 (60%), Positives = 98/143 (67%), Gaps = 7/143 (4%)
Frame = +2
Query: 170 ITMAVSADPKTSTKLILRKSEEAFAAAKESMPGGVNVTCSCLQICGWTANSY*LSQRMV- 346
I M+VS + KT K L+KSEEAF AAK MPGGVN + G Q +V
Sbjct: 33 IKMSVSVEEKTK-KFTLQKSEEAFNAAKNLMPGGVNSPVRAFKSVG--------GQPVVM 83
Query: 347 --ACGTWM----AMSTLTTLGAWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENTLA 508
A G+ + + +G+WGPAIIGHADD+VLAAL ETMKKGTSFGAPCLLEN LA
Sbjct: 84 DSAKGSRIRDIDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENVLA 143
Query: 509 EMVISAVPSIEMVRFVNSGTEAC 577
EMVISAVPSIEMVRFVNSGTEAC
Sbjct: 144 EMVISAVPSIEMVRFVNSGTEAC 166
Score = 42.4 bits (98), Expect(2) = 2e-07
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +3
Query: 252 RNRCPEVSTSPVRAFKSVGGQPILIDSVKG 341
+N P SPVRAFKSVGGQP+++DS KG
Sbjct: 59 KNLMPGGVNSPVRAFKSVGGQPVVMDSAKG 88
Score = 33.9 bits (76), Expect(2) = 2e-07
Identities = 14/26 (53%), Positives = 19/26 (72%)
Frame = +1
Query: 322 LLTQSKDGRMWDMDGNEYIDYVGCVG 399
++ +K R+ D+DGNEYIDYVG G
Sbjct: 82 VMDSAKGSRIRDIDGNEYIDYVGSWG 107
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 565,663,445
Number of Sequences: 1393205
Number of extensions: 14228606
Number of successful extensions: 55736
Number of sequences better than 10.0: 269
Number of HSP's better than 10.0 without gapping: 51918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55377
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
