Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005300A_C01 KMC005300A_c01
(619 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN03466.1| no apical meristem-like protein [Glycine max] 59 4e-08
gb|AAM50521.1|AF510215_1 nam-like protein 18 [Petunia x hybrida] 45 6e-04
gb|AAM61656.1| NAM, no apical meristem,-like protein [Arabidopsi... 41 0.014
ref|NP_200951.1| NAM, no apical meristem, - like protein; protei... 41 0.014
ref|NP_568182.1| NAM (no apical meristem)-like protein; protein ... 35 0.78
>gb|AAN03466.1| no apical meristem-like protein [Glycine max]
Length = 357
Score = 59.3 bits (142), Expect = 4e-08
Identities = 41/75 (54%), Positives = 48/75 (63%), Gaps = 3/75 (4%)
Frame = -3
Query: 605 LRAGYEN--NASNFVN-GFKPERDMVSVSQETDLTTDMNAETSSVVSNFEMGRRSFEHRN 435
LRA EN N SN N GF+PER+MVSVSQ+T L+TD+ AE SS +G+R FE
Sbjct: 284 LRAFLENQGNGSNMSNNGFEPEREMVSVSQKTSLSTDVKAEISS------LGKRHFE--- 334
Query: 434 RNQNQNPPPASAAGV 390
NQN P ASAA V
Sbjct: 335 ---NQNNPIASAAAV 346
>gb|AAM50521.1|AF510215_1 nam-like protein 18 [Petunia x hybrida]
Length = 331
Score = 45.4 bits (106), Expect = 6e-04
Identities = 26/51 (50%), Positives = 33/51 (63%)
Frame = -3
Query: 617 DQAILRAGYENNASNFVNGFKPERDMVSVSQETDLTTDMNAETSSVVSNFE 465
+ ILR Y+N N + FK E+ VS+SQET ++ DMN E SSVVSN E
Sbjct: 269 EPTILRTLYDNYDQNMQHIFKKEK--VSLSQETGVSIDMNTEISSVVSNLE 317
>gb|AAM61656.1| NAM, no apical meristem,-like protein [Arabidopsis thaliana]
Length = 323
Score = 40.8 bits (94), Expect = 0.014
Identities = 29/85 (34%), Positives = 44/85 (51%)
Frame = -3
Query: 617 DQAILRAGYENNASNFVNGFKPERDMVSVSQETDLTTDMNAETSSVVSNFEMGRRSFEHR 438
+ ++L A ENN + +SVSQET ++TDMN + S S+FE G+R F+
Sbjct: 256 EHSVLHAMIENNRRQSLK-------TMSVSQETGVSTDMNTDIS---SDFEFGKRRFD-- 303
Query: 437 NRNQNQNPPPASAAGVDHDHGLWSY 363
+Q P +S VD + W+Y
Sbjct: 304 ----SQEDPSSSTGPVDLE-PFWNY 323
>ref|NP_200951.1| NAM, no apical meristem, - like protein; protein id: At5g61430.1,
supported by cDNA: 12970., supported by cDNA:
gi_15451127, supported by cDNA: gi_20148334 [Arabidopsis
thaliana] gi|9757865|dbj|BAB08499.1| NAM (no apical
meristem)-like protein [Arabidopsis thaliana]
gi|15451128|gb|AAK96835.1| NAM (no apical meristem)-like
protein [Arabidopsis thaliana]
gi|20148335|gb|AAM10058.1| NAM (no apical meristem)-like
protein [Arabidopsis thaliana]
Length = 336
Score = 40.8 bits (94), Expect = 0.014
Identities = 29/85 (34%), Positives = 44/85 (51%)
Frame = -3
Query: 617 DQAILRAGYENNASNFVNGFKPERDMVSVSQETDLTTDMNAETSSVVSNFEMGRRSFEHR 438
+ ++L A ENN + +SVSQET ++TDMN + S S+FE G+R F+
Sbjct: 269 EHSVLHAMIENNRRQSLK-------TMSVSQETGVSTDMNTDIS---SDFEFGKRRFD-- 316
Query: 437 NRNQNQNPPPASAAGVDHDHGLWSY 363
+Q P +S VD + W+Y
Sbjct: 317 ----SQEDPSSSTGPVDLE-PFWNY 336
>ref|NP_568182.1| NAM (no apical meristem)-like protein; protein id: At5g07680.1,
supported by cDNA: 37792. [Arabidopsis thaliana]
gi|21593288|gb|AAM65237.1| NAM (no apical meristem)-like
protein [Arabidopsis thaliana]
Length = 315
Score = 35.0 bits (79), Expect = 0.78
Identities = 30/85 (35%), Positives = 44/85 (51%)
Frame = -3
Query: 617 DQAILRAGYENNASNFVNGFKPERDMVSVSQETDLTTDMNAETSSVVSNFEMGRRSFEHR 438
+Q++L+A ENN FK +S+SQET ++ N + SSV FE GR+ F+H
Sbjct: 251 EQSVLQAMMENNRRQ---NFKT----LSISQETGVS---NTDNSSV---FEFGRKRFDH- 296
Query: 437 NRNQNQNPPPASAAGVDHDHGLWSY 363
Q P S+ VD + W+Y
Sbjct: 297 -----QEVPSPSSGPVDLE-PFWNY 315
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 487,121,475
Number of Sequences: 1393205
Number of extensions: 9624120
Number of successful extensions: 26301
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 21813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25917
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
