Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005299A_C01 KMC005299A_c01
(572 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD34616.1|AF153284_1 putative progesterone-binding protein h... 119 3e-26
ref|NP_200037.1| progesterone-binding protein-like; protein id: ... 119 4e-26
gb|AAG13629.1|AC078840_20 putative steroid membrane binding prot... 117 1e-25
ref|NP_190458.1| putative progesterone-binding protein homolog A... 111 6e-24
gb|AAD34615.1|AF153283_1 putative progesterone-binding protein h... 108 6e-23
>gb|AAD34616.1|AF153284_1 putative progesterone-binding protein homolog [Arabidopsis
thaliana] gi|21555444|gb|AAM63860.1|
progesterone-binding protein-like [Arabidopsis thaliana]
Length = 220
Score = 119 bits (298), Expect = 3e-26
Identities = 63/98 (64%), Positives = 69/98 (70%)
Frame = -1
Query: 572 YALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFSEKYVKVGTVKSNVP 393
YALFAGKDASRALAKMSFEEKDLT DISGLGPFEL+ALQDWEYKF KY KVGTVK
Sbjct: 116 YALFAGKDASRALAKMSFEEKDLTWDISGLGPFELDALQDWEYKFMSKYAKVGTVKVAGS 175
Query: 392 VSETESTGEPSESTPRDVDAAKPAENGPSETAAVKSDE 279
ET S EP+E+ +D P +T KSD+
Sbjct: 176 EPETASVSEPTENVEQDAHVT----TTPEKTVVDKSDD 209
>ref|NP_200037.1| progesterone-binding protein-like; protein id: At5g52240.1,
supported by cDNA: 28003., supported by cDNA:
gi_15028112, supported by cDNA: gi_4960155 [Arabidopsis
thaliana] gi|8885537|dbj|BAA97467.1|
progesterone-binding protein-like [Arabidopsis thaliana]
gi|24030304|gb|AAN41322.1| putative progesterone-binding
protein [Arabidopsis thaliana]
Length = 220
Score = 119 bits (297), Expect = 4e-26
Identities = 62/98 (63%), Positives = 69/98 (70%)
Frame = -1
Query: 572 YALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFSEKYVKVGTVKSNVP 393
YALFAGKDASRALAKMSFEEKDLT D+SGLGPFEL+ALQDWEYKF KY KVGTVK
Sbjct: 116 YALFAGKDASRALAKMSFEEKDLTWDVSGLGPFELDALQDWEYKFMSKYAKVGTVKVAGS 175
Query: 392 VSETESTGEPSESTPRDVDAAKPAENGPSETAAVKSDE 279
ET S EP+E+ +D P +T KSD+
Sbjct: 176 EPETASVSEPTENVEQDAHVT----TTPGKTVVDKSDD 209
>gb|AAG13629.1|AC078840_20 putative steroid membrane binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 232
Score = 117 bits (293), Expect = 1e-25
Identities = 65/113 (57%), Positives = 75/113 (65%), Gaps = 16/113 (14%)
Frame = -1
Query: 572 YALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFSEKYVKVGTVKSNVP 393
YALFAGKDASRALAKMSFE +DLTGDISGLGPFEL+ALQDWEYKF KYVKVGTVK VP
Sbjct: 115 YALFAGKDASRALAKMSFEPQDLTGDISGLGPFELDALQDWEYKFMGKYVKVGTVKKTVP 174
Query: 392 V-----------SETESTGEP-----SESTPRDVDAAKPAENGPSETAAVKSD 282
V +ET + EP +E PR+V + + E + AA +
Sbjct: 175 VEDGAPSTSPETTETAAAAEPEKAPATEEKPREVSSEEVKEKEDAVAAAAPDE 227
>ref|NP_190458.1| putative progesterone-binding protein homolog Atmp2; protein id:
At3g48890.1, supported by cDNA: gi_16930426, supported
by cDNA: gi_19310508, supported by cDNA: gi_4960153
[Arabidopsis thaliana] gi|11358660|pir||T49285 probable
progesterone-binding protein homolog Atmp2 - Arabidopsis
thaliana gi|7576227|emb|CAB87917.1| putative
progesterone-binding protein homolog Atmp2 [Arabidopsis
thaliana] gi|16930427|gb|AAL31899.1|AF419567_1
AT3g48890/T21J18_160 [Arabidopsis thaliana]
gi|19310509|gb|AAL84988.1| AT3g48890/T21J18_160
[Arabidopsis thaliana]
Length = 233
Score = 111 bits (278), Expect = 6e-24
Identities = 60/98 (61%), Positives = 71/98 (72%)
Frame = -1
Query: 572 YALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFSEKYVKVGTVKSNVP 393
YALFAGKDASRALAKMSFE++DLTGDISGLG FELEALQDWEYKF KYVKVGT++
Sbjct: 112 YALFAGKDASRALAKMSFEDQDLTGDISGLGAFELEALQDWEYKFMSKYVKVGTIQKK-- 169
Query: 392 VSETESTGEPSESTPRDVDAAKPAENGPSETAAVKSDE 279
E + + EPSE+ + A + N E +A+ DE
Sbjct: 170 DGEGKESSEPSEA--KTASAEGLSTNTGEEASAITHDE 205
>gb|AAD34615.1|AF153283_1 putative progesterone-binding protein homolog [Arabidopsis
thaliana]
Length = 253
Score = 108 bits (269), Expect = 6e-23
Identities = 58/94 (61%), Positives = 69/94 (72%)
Frame = -1
Query: 572 YALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFSEKYVKVGTVKSNVP 393
YALFAGKDASRALAKMSFE++DLTGDISGLG FELEALQDWEYKF KYVKVGT++
Sbjct: 112 YALFAGKDASRALAKMSFEDQDLTGDISGLGAFELEALQDWEYKFMSKYVKVGTIQKK-- 169
Query: 392 VSETESTGEPSESTPRDVDAAKPAENGPSETAAV 291
E + + EPSE+ + A + N E +A+
Sbjct: 170 DGEGKESSEPSEA--KTASAEGLSTNTGEEASAI 201
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 459,132,990
Number of Sequences: 1393205
Number of extensions: 9442265
Number of successful extensions: 29233
Number of sequences better than 10.0: 112
Number of HSP's better than 10.0 without gapping: 26863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28990
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
