Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005297A_C02 KMC005297A_c02
(544 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65485.1| putative GDSL-motif lipase/hydrolase [Arabidopsis... 143 2e-33
ref|NP_178536.1| putative GDSL-motif lipase/hydrolase; protein i... 141 6e-33
ref|NP_181827.1| putative APG isolog protein; protein id: At2g42... 139 2e-32
pir||T04802 hypothetical protein F10M23.130 - Arabidopsis thalia... 134 5e-31
ref|NP_567758.1| putative APG protein; protein id: At4g26790.1, ... 134 5e-31
>gb|AAM65485.1| putative GDSL-motif lipase/hydrolase [Arabidopsis thaliana]
Length = 350
Score = 143 bits (360), Expect = 2e-33
Identities = 62/115 (53%), Positives = 83/115 (71%)
Frame = -1
Query: 538 CSEEYNNVALEFNGKLGLLVKKMNKELPGLQLVDANAYDMLLQIVTQPSYFGFEVAGVGC 359
C YN++A++FN KL +V+K+NKELPG LV +N Y+ ++I+ PS FGFEV G C
Sbjct: 236 CVGRYNDIAVQFNSKLDKMVEKLNKELPGSNLVFSNPYEPFMRIIKNPSSFGFEVVGAAC 295
Query: 358 CGTGRFEMGYMCDPKSPFTCTDANKYVFWDAFHPSQKTSQIVSNYLIEKHLAKFL 194
C TG FEMGY C +PFTCT+A+KYVFWD+FHP+QKT+ I++N L+ FL
Sbjct: 296 CATGMFEMGYGCQRNNPFTCTNADKYVFWDSFHPTQKTNHIMANALMNSTFPHFL 350
>ref|NP_178536.1| putative GDSL-motif lipase/hydrolase; protein id: At2g04570.1,
supported by cDNA: 39762. [Arabidopsis thaliana]
gi|25336279|pir||A84459 probable GDSL-motif
lipase/hydrolase [imported] - Arabidopsis thaliana
gi|4587595|gb|AAD25823.1| putative GDSL-motif
lipase/hydrolase [Arabidopsis thaliana]
Length = 350
Score = 141 bits (355), Expect = 6e-33
Identities = 61/115 (53%), Positives = 83/115 (72%)
Frame = -1
Query: 538 CSEEYNNVALEFNGKLGLLVKKMNKELPGLQLVDANAYDMLLQIVTQPSYFGFEVAGVGC 359
C YN++A++FN KL +V+K++KELPG LV +N Y+ ++I+ PS FGFEV G C
Sbjct: 236 CVGRYNDIAVQFNSKLDKMVEKLSKELPGSNLVFSNPYEPFMRIIKNPSSFGFEVVGAAC 295
Query: 358 CGTGRFEMGYMCDPKSPFTCTDANKYVFWDAFHPSQKTSQIVSNYLIEKHLAKFL 194
C TG FEMGY C +PFTCT+A+KYVFWD+FHP+QKT+ I++N L+ FL
Sbjct: 296 CATGMFEMGYGCQRNNPFTCTNADKYVFWDSFHPTQKTNHIMANALMNSTFPHFL 350
>ref|NP_181827.1| putative APG isolog protein; protein id: At2g42990.1 [Arabidopsis
thaliana] gi|25336313|pir||F84860 probable GDSL-motif
lipase/hydrolase [imported] - Arabidopsis thaliana
gi|4512657|gb|AAD21711.1| putative APG isolog protein
[Arabidopsis thaliana] gi|20197866|gb|AAM15290.1|
putative APG isolog protein [Arabidopsis thaliana]
Length = 303
Score = 139 bits (350), Expect = 2e-32
Identities = 58/111 (52%), Positives = 87/111 (78%)
Frame = -1
Query: 538 CSEEYNNVALEFNGKLGLLVKKMNKELPGLQLVDANAYDMLLQIVTQPSYFGFEVAGVGC 359
C+ YN++A++FNG+L LV K+N+EL G+++ AN YD++ IVT+P+ +G E++ C
Sbjct: 189 CARSYNDLAVDFNGRLRRLVTKLNRELTGIKIYFANPYDIMWDIVTKPNLYGLEISSSAC 248
Query: 358 CGTGRFEMGYMCDPKSPFTCTDANKYVFWDAFHPSQKTSQIVSNYLIEKHL 206
CGTG FEMG++C +P TC+DANK+VFWDAFHP+++T+QIVS++ KHL
Sbjct: 249 CGTGLFEMGFLCGQDNPLTCSDANKFVFWDAFHPTERTNQIVSDHFF-KHL 298
>pir||T04802 hypothetical protein F10M23.130 - Arabidopsis thaliana
gi|4455202|emb|CAB36525.1| putative APG protein
[Arabidopsis thaliana] gi|7269531|emb|CAB79534.1|
putative APG protein [Arabidopsis thaliana]
Length = 365
Score = 134 bits (338), Expect = 5e-31
Identities = 58/114 (50%), Positives = 86/114 (74%)
Frame = -1
Query: 538 CSEEYNNVALEFNGKLGLLVKKMNKELPGLQLVDANAYDMLLQIVTQPSYFGFEVAGVGC 359
C EEYN VA +FN K+ V ++N++L G+QLV +N YD++ +I+ P FGFE C
Sbjct: 251 CIEEYNIVARDFNIKMEEKVFQLNRDLNGIQLVFSNPYDLVSEIIYHPEAFGFENVRSAC 310
Query: 358 CGTGRFEMGYMCDPKSPFTCTDANKYVFWDAFHPSQKTSQIVSNYLIEKHLAKF 197
CGTG +EM Y+CD +PFTC+DA+KYVFWD+FHP++KT+ IV+N++++ L++F
Sbjct: 311 CGTGYYEMSYLCDKMNPFTCSDASKYVFWDSFHPTEKTNAIVANHVLKYDLSRF 364
>ref|NP_567758.1| putative APG protein; protein id: At4g26790.1, supported by cDNA:
2574., supported by cDNA: gi_18252232 [Arabidopsis
thaliana] gi|18252233|gb|AAL61949.1| putative APG
protein [Arabidopsis thaliana]
gi|21387003|gb|AAM47905.1| putative APG protein
[Arabidopsis thaliana] gi|21554559|gb|AAM63613.1|
putative APG protein [Arabidopsis thaliana]
Length = 351
Score = 134 bits (338), Expect = 5e-31
Identities = 58/114 (50%), Positives = 86/114 (74%)
Frame = -1
Query: 538 CSEEYNNVALEFNGKLGLLVKKMNKELPGLQLVDANAYDMLLQIVTQPSYFGFEVAGVGC 359
C EEYN VA +FN K+ V ++N++L G+QLV +N YD++ +I+ P FGFE C
Sbjct: 237 CIEEYNIVARDFNIKMEEKVFQLNRDLNGIQLVFSNPYDLVSEIIYHPEAFGFENVRSAC 296
Query: 358 CGTGRFEMGYMCDPKSPFTCTDANKYVFWDAFHPSQKTSQIVSNYLIEKHLAKF 197
CGTG +EM Y+CD +PFTC+DA+KYVFWD+FHP++KT+ IV+N++++ L++F
Sbjct: 297 CGTGYYEMSYLCDKMNPFTCSDASKYVFWDSFHPTEKTNAIVANHVLKYDLSRF 350
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 497,560,538
Number of Sequences: 1393205
Number of extensions: 11083677
Number of successful extensions: 25654
Number of sequences better than 10.0: 251
Number of HSP's better than 10.0 without gapping: 24630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25510
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
