Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005296A_C01 KMC005296A_c01
(653 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181650.2| unknown protein; protein id: At2g41170.1 [Arabi... 45 2e-08
dbj|BAA87845.1| unnamed protein product [Oryza sativa (japonica ... 43 2e-07
gb|AAL69504.1| unknown protein [Arabidopsis thaliana] gi|2046591... 49 8e-05
ref|NP_180815.1| unknown protein; protein id: At2g32560.1 [Arabi... 49 8e-05
ref|NP_180253.1| unknown protein; protein id: At2g26850.1 [Arabi... 49 8e-05
>ref|NP_181650.2| unknown protein; protein id: At2g41170.1 [Arabidopsis thaliana]
Length = 371
Score = 45.1 bits (105), Expect(2) = 2e-08
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 7/46 (15%)
Frame = -3
Query: 651 NVEDTREM-------LVLECILERLPQSSLCQMASVCHSLRERCVS 535
N ED +M L L+CILE+L S LC M SVC LR++CVS
Sbjct: 50 NQEDENKMSLLDLPDLTLDCILEKLSPSELCAMTSVCSELRDKCVS 95
Score = 40.4 bits (93), Expect = 0.021
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -2
Query: 601 APSIFTLSNGQCLPFLEGEMCEYLWERHTKQKWGR-VGLVAYMEWKWHVAS 452
+PS C + + ++LWE+H + KWGR +G A EWK HVA+
Sbjct: 75 SPSELCAMTSVCSELRDKCVSDHLWEKHMETKWGRLMGDAAIQEWKSHVAT 125
Score = 35.4 bits (80), Expect(2) = 2e-08
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Frame = -1
Query: 485 CLHGVEMACCFQKEHWQ-RLVPLH*PFSWMRMKVSTSYSSKHR---SYVPP-DSFMTWYV 321
CL + K +W R V PF+W+ S+++ ++R SY+ P DS M WY
Sbjct: 129 CLTSSSSSSRKSKPNWSSRFVANLKPFAWL----SSNHGCENRGSSSYLAPIDSVMYWYS 184
Query: 320 ALDKGSFWY 294
L+ G FW+
Sbjct: 185 NLENGKFWF 193
>dbj|BAA87845.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|11041564|dbj|BAB00648.2| unnamed protein product
[Oryza sativa (japonica cultivar-group)]
gi|11138071|dbj|BAB17744.1| contains ESTs
AU081301(E20138),C99280(E10593)~similar to Arabidopsis
thaliana chromosome 2, F12C20.11~unknown protein [Oryza
sativa (japonica cultivar-group)]
gi|13873014|dbj|BAB44118.1| B1085F09.14 [Oryza sativa
(japonica cultivar-group)]
Length = 415
Score = 42.7 bits (99), Expect = 0.004
Identities = 19/29 (65%), Positives = 21/29 (71%)
Frame = -3
Query: 627 LVLECILERLPQSSLCQMASVCHSLRERC 541
L +ECIL RLP S L MA VC S+RERC
Sbjct: 103 LAIECILARLPPSELRNMAGVCRSMRERC 131
Score = 38.5 bits (88), Expect(2) = 2e-07
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -2
Query: 598 PSIFTLSNGQCLPFLEGEMCEYLWERHTKQKWGRV-GLVAYMEWKWHVASKRNIG 437
PS G C E ++LWERH +KWG V G A EW+ ++AS + G
Sbjct: 114 PSELRNMAGVCRSMRERCRGDHLWERHMSEKWGGVLGHAAREEWRTYLASAADTG 168
Score = 38.1 bits (87), Expect(2) = 2e-07
Identities = 14/38 (36%), Positives = 21/38 (54%)
Frame = -1
Query: 407 SWMRMKVSTSYSSKHRSYVPPDSFMTWYVALDKGSFWY 294
SWMR + K V DS M+WY++++ G FW+
Sbjct: 197 SWMRPRADGGSGGKSAGPVLDDSIMSWYLSMESGKFWF 234
>gb|AAL69504.1| unknown protein [Arabidopsis thaliana] gi|20465913|gb|AAM20109.1|
unknown protein [Arabidopsis thaliana]
gi|21553696|gb|AAM62789.1| unknown [Arabidopsis
thaliana]
Length = 371
Score = 48.5 bits (114), Expect = 8e-05
Identities = 22/31 (70%), Positives = 24/31 (76%)
Frame = -3
Query: 627 LVLECILERLPQSSLCQMASVCHSLRERCVS 535
L L+CIL+ LP S LC MA VC SLRERCVS
Sbjct: 68 LALDCILDLLPPSGLCSMARVCSSLRERCVS 98
Score = 38.5 bits (88), Expect = 0.080
Identities = 15/40 (37%), Positives = 26/40 (64%), Gaps = 1/40 (2%)
Frame = -2
Query: 568 CLPFLEGEMCEYLWERHTKQKWGRV-GLVAYMEWKWHVAS 452
C E + ++LWE+H K KWG++ G A+ EW+ +++S
Sbjct: 89 CSSLRERCVSDHLWEKHLKTKWGKILGPAAHREWQCYISS 128
>ref|NP_180815.1| unknown protein; protein id: At2g32560.1 [Arabidopsis thaliana]
gi|7487431|pir||T02555 hypothetical protein At2g32560
[imported] - Arabidopsis thaliana
gi|3298544|gb|AAC25938.1| unknown protein [Arabidopsis
thaliana]
Length = 228
Score = 48.5 bits (114), Expect = 8e-05
Identities = 22/31 (70%), Positives = 24/31 (76%)
Frame = -3
Query: 627 LVLECILERLPQSSLCQMASVCHSLRERCVS 535
L L+CIL+ LP S LC MA VC SLRERCVS
Sbjct: 9 LALDCILDLLPPSGLCSMARVCSSLRERCVS 39
Score = 38.5 bits (88), Expect = 0.080
Identities = 15/40 (37%), Positives = 26/40 (64%), Gaps = 1/40 (2%)
Frame = -2
Query: 568 CLPFLEGEMCEYLWERHTKQKWGRV-GLVAYMEWKWHVAS 452
C E + ++LWE+H K KWG++ G A+ EW+ +++S
Sbjct: 30 CSSLRERCVSDHLWEKHLKTKWGKILGPAAHREWQCYISS 69
>ref|NP_180253.1| unknown protein; protein id: At2g26850.1 [Arabidopsis thaliana]
gi|7459608|pir||T02650 hypothetical protein At2g26850
[imported] - Arabidopsis thaliana
gi|3426041|gb|AAC32240.1| unknown protein [Arabidopsis
thaliana]
Length = 346
Score = 48.5 bits (114), Expect = 8e-05
Identities = 23/31 (74%), Positives = 24/31 (77%)
Frame = -3
Query: 627 LVLECILERLPQSSLCQMASVCHSLRERCVS 535
L L+CILE LP S LC MA VC SLRERCVS
Sbjct: 68 LPLDCILELLPPSELCTMARVCSSLRERCVS 98
Score = 37.0 bits (84), Expect = 0.23
Identities = 15/40 (37%), Positives = 26/40 (64%), Gaps = 1/40 (2%)
Frame = -2
Query: 568 CLPFLEGEMCEYLWERHTKQKWGRV-GLVAYMEWKWHVAS 452
C E + ++LWE+H K KWG++ G A+ EW+ +++S
Sbjct: 89 CSSLRERCVSDHLWEKHLKTKWGKILGPSAHKEWQCYLSS 128
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 566,104,579
Number of Sequences: 1393205
Number of extensions: 12102314
Number of successful extensions: 39375
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 38675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39372
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
