Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005292A_C01 KMC005292A_c01
(284 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_141455.2| similar to apical iodide transporter , putative... 31 5.0
ref|NP_598959.1| vomeronasal 1 receptor, F1 [Mus musculus] gi|18... 30 8.5
ref|ZP_00064685.1| hypothetical protein [Microbulbifer degradans... 30 8.5
>ref|XP_141455.2| similar to apical iodide transporter , putative [Homo sapiens] [Mus
musculus]
Length = 619
Score = 30.8 bits (68), Expect = 5.0
Identities = 14/32 (43%), Positives = 19/32 (58%)
Frame = -2
Query: 214 FLIVYIFVVYMQG*FFLPIFVLKRIFCTHQIL 119
FLI Y+FVV+ FLP+F I T++ L
Sbjct: 84 FLISYVFVVFFTSELFLPVFYRSGITSTYEYL 115
>ref|NP_598959.1| vomeronasal 1 receptor, F1 [Mus musculus]
gi|18558695|gb|AAL47917.1| vomeronasal receptor V1RF1
[Mus musculus]
Length = 329
Score = 30.0 bits (66), Expect = 8.5
Identities = 12/32 (37%), Positives = 19/32 (58%)
Frame = -1
Query: 104 IVFIFRTFNYFHSR*ELASVCVTFTKNCTWHL 9
I+ + TF F++ L ++C+ F N TWHL
Sbjct: 259 ILLLVSTFVCFYTLSTLLTICLNFLVNLTWHL 290
>ref|ZP_00064685.1| hypothetical protein [Microbulbifer degradans 2-40]
Length = 446
Score = 30.0 bits (66), Expect = 8.5
Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Frame = +1
Query: 28 FVKVTQTEANSHLL*K*L-----KVLKMNTISYFSIKSGGYKRSFSARKLVERISLACKL 192
++K T TE++ HL+ + L K+ TI+ ++GG R + +V + + L
Sbjct: 109 YMKHTDTESHYHLIIEDLVNTDQKLYMTYTITVSDEQAGGVWRRLTILSIVGGVGVIVLL 168
Query: 193 QKYKQ*GRNRIAVLGSISNYVNRV 264
++Q + I+ L S+SN++ ++
Sbjct: 169 LFFRQIMLHAISPLSSLSNWIEKL 192
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 216,234,536
Number of Sequences: 1393205
Number of extensions: 3848547
Number of successful extensions: 7420
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7419
length of database: 448,689,247
effective HSP length: 70
effective length of database: 351,164,897
effective search space used: 8427957528
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
