Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005291A_C01 KMC005291A_c01
(511 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61436.1| unknown [Arabidopsis thaliana] 108 3e-23
ref|NP_567800.1| expressed protein; protein id: At4g28210.1, sup... 107 1e-22
ref|XP_138975.3| similar to Hypothetical protein KIAA0514 [Mus m... 37 0.10
ref|NP_702226.1| hypothetical protein [Plasmodium falciparum 3D7... 33 1.5
ref|NP_768111.1| bll1471 [Bradyrhizobium japonicum] gi|27349723|... 33 1.9
>gb|AAM61436.1| unknown [Arabidopsis thaliana]
Length = 348
Score = 108 bits (271), Expect = 3e-23
Identities = 58/92 (63%), Positives = 70/92 (76%), Gaps = 1/92 (1%)
Frame = -1
Query: 508 IKRRDDVSSAMPAAAVLAAVGEPWVRVLVIISFTALAIFQYS-QTPSEGKEVEEVGTQER 332
IK+RDDV+SA+P+AAVLA VGEPWVRV+ II + ALA++ S +T SE EE R
Sbjct: 261 IKKRDDVTSALPSAAVLAGVGEPWVRVVAIIGYLALAMYHNSTKTSSE----EESQILRR 316
Query: 331 RLPIPLLLVALAIGLRVGAKWAGYRHLTWMIV 236
P+PLL ALAIG+R+ AKWAGYRHLTWMIV
Sbjct: 317 APPMPLLAAALAIGVRLAAKWAGYRHLTWMIV 348
>ref|NP_567800.1| expressed protein; protein id: At4g28210.1, supported by cDNA:
119956. [Arabidopsis thaliana] gi|7460045|pir||T09037
hypothetical protein F26K10.90 - Arabidopsis thaliana
gi|7269675|emb|CAB79623.1| hypothetical protein
[Arabidopsis thaliana]
Length = 348
Score = 107 bits (266), Expect = 1e-22
Identities = 57/92 (61%), Positives = 69/92 (74%), Gaps = 1/92 (1%)
Frame = -1
Query: 508 IKRRDDVSSAMPAAAVLAAVGEPWVRVLVIISFTALAIFQYS-QTPSEGKEVEEVGTQER 332
IK+RDDV+SA+P+AAVLA VGEPWVRV+ I + ALA++ S +T SE EE R
Sbjct: 261 IKKRDDVTSALPSAAVLAGVGEPWVRVVAITGYLALAMYHNSTKTSSE----EESQILRR 316
Query: 331 RLPIPLLLVALAIGLRVGAKWAGYRHLTWMIV 236
P+PLL ALAIG+R+ AKWAGYRHLTWMIV
Sbjct: 317 APPMPLLAAALAIGVRLAAKWAGYRHLTWMIV 348
>ref|XP_138975.3| similar to Hypothetical protein KIAA0514 [Mus musculus]
Length = 503
Score = 37.4 bits (85), Expect = 0.10
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Frame = +3
Query: 33 QSNYKLICTSTACDPWLPFKTMEKTLQQWQQGEQNNNPFYLYQNLPQLYRPPFFHSSSNS 212
QS+ L+C P L K+ T+ + QQGE ++P L + Q P ++S +
Sbjct: 159 QSSSSLLCEGREQKPELR-KSASSTVWRAQQGEAGSSPRILQEEACQTEIPEHAQTASTA 217
Query: 213 DISGFGGH----TIIHVKCLYPAHLAPTRKPIAKATRRS 317
+G GGH T+ +V + L R P A +RS
Sbjct: 218 SQAGAGGHWRSSTVGNVSTMGIGDLCRLRAPSVAAVQRS 256
>ref|NP_702226.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497406|gb|AAN36950.1|AE014821_37 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1788
Score = 33.5 bits (75), Expect = 1.5
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Frame = +1
Query: 1 KSKWQ----MAFTGNSQITSLYAQAQPVILGSLLKPWKKHYNNGNKENRITTLSIYIKTY 168
KSKW+ M TGN +++ +L +++ KK+ NN N N+ L+ Y TY
Sbjct: 505 KSKWEQYAHMNNTGNQN--NIHLIKNDKVLQHMMRNEKKNKNNNNNNNKFINLNKYDSTY 562
Query: 169 LN-SIDHHS 192
N ID+ S
Sbjct: 563 ENICIDNES 571
>ref|NP_768111.1| bll1471 [Bradyrhizobium japonicum] gi|27349723|dbj|BAC46736.1|
bll1471 [Bradyrhizobium japonicum USDA 110]
Length = 726
Score = 33.1 bits (74), Expect = 1.9
Identities = 20/79 (25%), Positives = 38/79 (47%)
Frame = -1
Query: 511 FIKRRDDVSSAMPAAAVLAAVGEPWVRVLVIISFTALAIFQYSQTPSEGKEVEEVGTQER 332
++ RD ++ + W V V +A+A+ + + ++ +E+ +R
Sbjct: 293 YLALRDRLADTLVKGEKAEMTANQWSPVTVGRLSSAVAVAEAALDAAKSHTLEQRSAAQR 352
Query: 331 RLPIPLLLVALAIGLRVGA 275
L + L L+ALA+GL VGA
Sbjct: 353 ALVMQLALLALAVGLAVGA 371
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 477,239,708
Number of Sequences: 1393205
Number of extensions: 10993234
Number of successful extensions: 31479
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 30287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31450
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
