Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005287A_C01 KMC005287A_c01
(537 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P34899|GLYM_PEA SERINE HYDROXYMETHYLTRANSFERASE, MITOCHONDRIA... 176 2e-43
sp|P50433|GLYM_SOLTU SERINE HYDROXYMETHYLTRANSFERASE, MITOCHONDR... 170 1e-41
gb|AAL06913.1| AT4g37930/F20D10_50 [Arabidopsis thaliana] 164 6e-40
ref|NP_195506.1| glycine hydroxymethyltransferase like protein; ... 164 6e-40
ref|NP_568488.1| glycine hydroxymethyltransferase - like protein... 162 2e-39
>sp|P34899|GLYM_PEA SERINE HYDROXYMETHYLTRANSFERASE, MITOCHONDRIAL PRECURSOR (SERINE
METHYLASE) (GLYCINE HYDROXYMETHYLTRANSFERASE) (SHMT)
gi|282928|pir||A42906 glycine hydroxymethyltransferase
(EC 2.1.2.1) - garden pea gi|169158|gb|AAA33687.1|
serine hydroxymethyltransferase
Length = 518
Score = 176 bits (445), Expect = 2e-43
Identities = 86/101 (85%), Positives = 95/101 (93%)
Frame = -3
Query: 535 VPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEFFDAAVNLALKAKAESKGTKLKDFL 356
VPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAE+FDAAV+LALK KAESKGTKLKDF+
Sbjct: 418 VPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDAAVSLALKVKAESKGTKLKDFV 477
Query: 355 ATIQESSYFQTEIAKLRHDVEEYAKQFPTIGFEKATMKYKE 233
+Q SSY Q+EI+KL+HDVEE+AKQFPTIGFEKATMKY +
Sbjct: 478 EALQTSSYVQSEISKLKHDVEEFAKQFPTIGFEKATMKYNK 518
>sp|P50433|GLYM_SOLTU SERINE HYDROXYMETHYLTRANSFERASE, MITOCHONDRIAL PRECURSOR (SERINE
METHYLASE) (GLYCINE HYDROXYMETHYLTRANSFERASE) (SHMT)
gi|481944|pir||S40218 glycine hydroxymethyltransferase
(EC 2.1.2.1) - potato gi|438247|emb|CAA81082.1| glycine
hydroxymethyltransferase [Solanum tuberosum]
Length = 518
Score = 170 bits (430), Expect = 1e-41
Identities = 82/100 (82%), Positives = 94/100 (94%)
Frame = -3
Query: 535 VPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEFFDAAVNLALKAKAESKGTKLKDFL 356
VPGDVSAMVPGGIRMGTPALTSRGF+EEDFVKVA+FFDAAV +A+K KAE++GTKLKDF+
Sbjct: 418 VPGDVSAMVPGGIRMGTPALTSRGFLEEDFVKVADFFDAAVKIAVKVKAETQGTKLKDFV 477
Query: 355 ATIQESSYFQTEIAKLRHDVEEYAKQFPTIGFEKATMKYK 236
AT++ S+ ++EIAKLRHDVEEYAKQFPTIGFEK TMKYK
Sbjct: 478 ATLESSAPIKSEIAKLRHDVEEYAKQFPTIGFEKETMKYK 517
>gb|AAL06913.1| AT4g37930/F20D10_50 [Arabidopsis thaliana]
Length = 517
Score = 164 bits (415), Expect = 6e-40
Identities = 79/100 (79%), Positives = 91/100 (91%)
Frame = -3
Query: 535 VPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEFFDAAVNLALKAKAESKGTKLKDFL 356
VPGDVSAMVPGGIRMGTPALTSRGFVEEDF KVAE+FD AV +ALK K+E++GTKLKDF+
Sbjct: 417 VPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFV 476
Query: 355 ATIQESSYFQTEIAKLRHDVEEYAKQFPTIGFEKATMKYK 236
+ ++ SS Q+EIAKLRH+VEE+AKQFPTIGFEK TMKYK
Sbjct: 477 SAMESSSTIQSEIAKLRHEVEEFAKQFPTIGFEKETMKYK 516
>ref|NP_195506.1| glycine hydroxymethyltransferase like protein; protein id:
At4g37930.1, supported by cDNA: 33799., supported by
cDNA: gi_15809971, supported by cDNA: gi_16226392,
supported by cDNA: gi_16323082, supported by cDNA:
gi_17979461 [Arabidopsis thaliana]
gi|7433551|pir||T05620 glycine hydroxymethyltransferase
(EC 2.1.2.1) F20D10.50 - Arabidopsis thaliana
gi|4467099|emb|CAB37533.1| glycine
hydroxymethyltransferase like protein [Arabidopsis
thaliana] gi|6899945|emb|CAB71289.1| serine
hydroxymethyl transferase [Arabidopsis thaliana]
gi|7270776|emb|CAB80458.1| glycine
hydroxymethyltransferase like protein [Arabidopsis
thaliana] gi|16226393|gb|AAL16156.1|AF428388_1
AT4g37930/F20D10_50 [Arabidopsis thaliana]
gi|16323083|gb|AAL15276.1| AT4g37930/F20D10_50
[Arabidopsis thaliana] gi|17979462|gb|AAL50068.1|
AT4g37930/F20D10_50 [Arabidopsis thaliana]
Length = 517
Score = 164 bits (415), Expect = 6e-40
Identities = 79/100 (79%), Positives = 91/100 (91%)
Frame = -3
Query: 535 VPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEFFDAAVNLALKAKAESKGTKLKDFL 356
VPGDVSAMVPGGIRMGTPALTSRGFVEEDF KVAE+FD AV +ALK K+E++GTKLKDF+
Sbjct: 417 VPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFV 476
Query: 355 ATIQESSYFQTEIAKLRHDVEEYAKQFPTIGFEKATMKYK 236
+ ++ SS Q+EIAKLRH+VEE+AKQFPTIGFEK TMKYK
Sbjct: 477 SAMESSSTIQSEIAKLRHEVEEFAKQFPTIGFEKETMKYK 516
>ref|NP_568488.1| glycine hydroxymethyltransferase - like protein; protein id:
At5g26780.1, supported by cDNA: gi_14334887 [Arabidopsis
thaliana]
Length = 517
Score = 162 bits (410), Expect = 2e-39
Identities = 79/101 (78%), Positives = 90/101 (88%)
Frame = -3
Query: 535 VPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEFFDAAVNLALKAKAESKGTKLKDFL 356
VPGDVSAMVPGGIRMGTPALTSRGF+EEDF KVAE+FD AV +ALK KAES+GTKLKDF+
Sbjct: 417 VPGDVSAMVPGGIRMGTPALTSRGFIEEDFAKVAEYFDLAVKIALKIKAESQGTKLKDFV 476
Query: 355 ATIQESSYFQTEIAKLRHDVEEYAKQFPTIGFEKATMKYKE 233
AT+Q + Q+E++KLR VEEYAKQFPTIGFEK TM+YKE
Sbjct: 477 ATMQSNEKLQSEMSKLREMVEEYAKQFPTIGFEKETMRYKE 517
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,416,362
Number of Sequences: 1393205
Number of extensions: 9678303
Number of successful extensions: 29924
Number of sequences better than 10.0: 245
Number of HSP's better than 10.0 without gapping: 28629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29887
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
