Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005286A_C01 KMC005286A_c01
(632 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG38144.1| unknown [Glycine max] 196 2e-49
gb|AAG38145.1| unknown [Glycine max] 196 2e-49
ref|NP_201251.1| ZW10-like protein; protein id: At5g64460.1, sup... 164 9e-40
pir||T52444 hypothetical protein ZW10 [imported] - Arabidopsis t... 148 5e-35
pir||D96616 hypothetical protein F19C14.10 [imported] - Arabidop... 148 5e-35
>gb|AAG38144.1| unknown [Glycine max]
Length = 284
Score = 196 bits (499), Expect = 2e-49
Identities = 94/119 (78%), Positives = 105/119 (87%), Gaps = 1/119 (0%)
Frame = -3
Query: 630 DFSLVETDEDTLWAPE-REKKEAVAARGLKFLEWLSTRKEKEIAVVTHSSFLFNTLSAFG 454
DFSL+E DED LW P+ REK E VAARGLKFLEWL TRKEKEIAVVTHS FLF++LSAFG
Sbjct: 159 DFSLIENDEDILWKPDIREKNEEVAARGLKFLEWLWTRKEKEIAVVTHSGFLFHSLSAFG 218
Query: 453 NDCHPNIKSEICKHFANCELRSMVIIDRGVIGSNESTTNYPGKIPRGPDLPSESAD*NH 277
NDCHPN+K+EIC HFANCELRSMVIIDRG+IGS+ES+TNYPGK+P G DLPS+ AD H
Sbjct: 219 NDCHPNVKNEICTHFANCELRSMVIIDRGMIGSDESSTNYPGKVPDGLDLPSDVADQKH 277
>gb|AAG38145.1| unknown [Glycine max]
Length = 284
Score = 196 bits (499), Expect = 2e-49
Identities = 94/119 (78%), Positives = 105/119 (87%), Gaps = 1/119 (0%)
Frame = -3
Query: 630 DFSLVETDEDTLWAPE-REKKEAVAARGLKFLEWLSTRKEKEIAVVTHSSFLFNTLSAFG 454
DFSL+E DED LW P+ REK E VAARGLKFLEWL TRKEKEIAVVTHS FLF++LSAFG
Sbjct: 159 DFSLIENDEDILWKPDIREKNEEVAARGLKFLEWLWTRKEKEIAVVTHSGFLFHSLSAFG 218
Query: 453 NDCHPNIKSEICKHFANCELRSMVIIDRGVIGSNESTTNYPGKIPRGPDLPSESAD*NH 277
NDCHPN+K+EIC HFANCELRSMVIIDRG+IGS+ES+TNYPGK+P G DLPS+ AD H
Sbjct: 219 NDCHPNVKNEICTHFANCELRSMVIIDRGMIGSDESSTNYPGKVPDGLDLPSDVADQKH 277
>ref|NP_201251.1| ZW10-like protein; protein id: At5g64460.1, supported by cDNA:
gi_14334941 [Arabidopsis thaliana]
gi|10178227|dbj|BAB11607.1| ZW10-like protein
[Arabidopsis thaliana] gi|24030311|gb|AAN41324.1|
putative ZW10 protein [Arabidopsis thaliana]
Length = 282
Score = 164 bits (415), Expect = 9e-40
Identities = 77/114 (67%), Positives = 95/114 (82%), Gaps = 1/114 (0%)
Frame = -3
Query: 630 DFSLVETDEDTLW-APEREKKEAVAARGLKFLEWLSTRKEKEIAVVTHSSFLFNTLSAFG 454
DFSL+E++ED LW A RE E +AARG KFL WL TRKEKEIA+VTHS FLF+TL+A
Sbjct: 159 DFSLIESEEDKLWKADVRETIEELAARGKKFLNWLWTRKEKEIAIVTHSGFLFHTLNALQ 218
Query: 453 NDCHPNIKSEICKHFANCELRSMVIIDRGVIGSNESTTNYPGKIPRGPDLPSES 292
N+CHP++K EIC HFANCELRSMVI+DR ++GS+ S T+YPGKIP+G DLPS++
Sbjct: 219 NECHPDVKKEICGHFANCELRSMVIVDRSMLGSDSSVTDYPGKIPKGIDLPSDA 272
>pir||T52444 hypothetical protein ZW10 [imported] - Arabidopsis thaliana
(fragment) gi|6520148|dbj|BAA87937.1| ZW10 [Arabidopsis
thaliana]
Length = 299
Score = 148 bits (374), Expect = 5e-35
Identities = 70/116 (60%), Positives = 88/116 (75%), Gaps = 1/116 (0%)
Frame = -3
Query: 630 DFSLVETDEDTLWAPE-REKKEAVAARGLKFLEWLSTRKEKEIAVVTHSSFLFNTLSAFG 454
DFSL+ETDED LW P+ RE+ + +A RG+KF WLSTRKEKEIAVVTHS FL+ TL++FG
Sbjct: 182 DFSLIETDEDVLWKPDIREEDKDIATRGVKFFNWLSTRKEKEIAVVTHSGFLYQTLNSFG 241
Query: 453 NDCHPNIKSEICKHFANCELRSMVIIDRGVIGSNESTTNYPGKIPRGPDLPSESAD 286
NDC P++K+EI K F NCELRS V++D+ + S+ TNYPG I G D S+ AD
Sbjct: 242 NDCDPSVKNEISKKFVNCELRSFVLVDKCMSSSDPPMTNYPGTILTGEDASSDIAD 297
>pir||D96616 hypothetical protein F19C14.10 [imported] - Arabidopsis thaliana
gi|8979945|gb|AAF82259.1|AC008051_10 Identical to gene
ZW10 from Arabidopsis thaliana gb|AB028195 and is a
member of the Phosphoglycerate mutase PF|00300 family
Length = 313
Score = 148 bits (374), Expect = 5e-35
Identities = 70/116 (60%), Positives = 88/116 (75%), Gaps = 1/116 (0%)
Frame = -3
Query: 630 DFSLVETDEDTLWAPE-REKKEAVAARGLKFLEWLSTRKEKEIAVVTHSSFLFNTLSAFG 454
DFSL+ETDED LW P+ RE+ + +A RG+KF WLSTRKEKEIAVVTHS FL+ TL++FG
Sbjct: 196 DFSLIETDEDVLWKPDIREEDKDIATRGVKFFNWLSTRKEKEIAVVTHSGFLYQTLNSFG 255
Query: 453 NDCHPNIKSEICKHFANCELRSMVIIDRGVIGSNESTTNYPGKIPRGPDLPSESAD 286
NDC P++K+EI K F NCELRS V++D+ + S+ TNYPG I G D S+ AD
Sbjct: 256 NDCDPSVKNEISKKFVNCELRSFVLVDKCMSSSDPPMTNYPGTILTGEDASSDIAD 311
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 524,260,540
Number of Sequences: 1393205
Number of extensions: 10745500
Number of successful extensions: 21655
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 20292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21629
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
