Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005285A_C01 KMC005285A_c01
(676 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200619.1| putative protein; protein id: At5g58110.1, supp... 146 3e-34
ref|NP_610121.2| CG1416-PA [Drosophila melanogaster] gi|24585722... 42 0.010
ref|NP_197690.1| C2H2-type zinc finger protein-like; protein id:... 36 0.42
ref|NP_524716.1| stoned B; stoned [Drosophila melanogaster] gi|7... 33 3.6
gb|EAA21517.1| hypothetical protein [Plasmodium yoelii yoelii] 33 4.6
>ref|NP_200619.1| putative protein; protein id: At5g58110.1, supported by cDNA:
gi_18087564, supported by cDNA: gi_20466112 [Arabidopsis
thaliana] gi|9759537|dbj|BAB11003.1|
gene_id:K21L19.11~ref|NP_036243.1~similar to unknown
protein [Arabidopsis thaliana]
gi|18087565|gb|AAL58914.1|AF462824_1 AT5g58110/k21l19_90
[Arabidopsis thaliana] gi|20466113|gb|AAM19978.1|
AT5g58110/k21l19_90 [Arabidopsis thaliana]
Length = 196
Score = 146 bits (368), Expect = 3e-34
Identities = 71/117 (60%), Positives = 92/117 (77%)
Frame = -3
Query: 674 SIAFSSGSAEVEDVTKCVGDAFMVIVRNKKRVSYTYELTLKVKGEWTIQGDKKLVKGDIE 495
S+ FSSG AE+ DV +CVGDAF+V VRNKKRV YTYEL+LKV+GEW+ + + K VKG +E
Sbjct: 80 SLQFSSGKAEIIDVNRCVGDAFLVTVRNKKRVGYTYELSLKVEGEWSFEENMKKVKGSLE 139
Query: 494 VPEFSFGELDDLQMQVRLNESTDILNKDKIEICNDLKLFLKPVREKLLQFEQELKDR 324
+PEFSFGELDDL++ V+L+E ++ + K I D+K FL+P+R KL FEQELKDR
Sbjct: 140 IPEFSFGELDDLEVDVKLSEDKELSQQLKQRIKLDMKQFLEPIRLKLGLFEQELKDR 196
>ref|NP_610121.2| CG1416-PA [Drosophila melanogaster] gi|24585722|ref|NP_724361.1|
CG1416-PB [Drosophila melanogaster]
gi|24585724|ref|NP_724362.1| CG1416-PC [Drosophila
melanogaster] gi|21464348|gb|AAM51977.1| LD43819p
[Drosophila melanogaster] gi|22947044|gb|AAF57232.2|
CG1416-PA [Drosophila melanogaster]
gi|22947045|gb|AAN11136.1| CG1416-PB [Drosophila
melanogaster] gi|22947046|gb|AAN11137.1| CG1416-PC
[Drosophila melanogaster]
Length = 354
Score = 41.6 bits (96), Expect = 0.010
Identities = 33/107 (30%), Positives = 56/107 (51%), Gaps = 1/107 (0%)
Frame = -3
Query: 644 VEDVTKCVGDAFMVIVRNKKRVSYTYELTLKVKGEWTIQGDKKLVKGDIEVPEFS-FGEL 468
V+ V KC G+A + + K Y +EL LK G+ ++ K + KG + +P S EL
Sbjct: 58 VDSVDKCSGEATVNNRKGKLIFFYEWELVLKWSGK-LLKNSKLIHKGKLTIPNLSEENEL 116
Query: 467 DDLQMQVRLNESTDILNKDKIEICNDLKLFLKPVREKLLQFEQELKD 327
D+++ V ++ES D K + N + VR++L + +ELK+
Sbjct: 117 ADVEITVTIDESNDESETLKQFMYN---VGRDRVRQQLASYIRELKE 160
>ref|NP_197690.1| C2H2-type zinc finger protein-like; protein id: At5g22990.1
[Arabidopsis thaliana]
Length = 324
Score = 36.2 bits (82), Expect = 0.42
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
Frame = +1
Query: 274 ENKKVHGFYHRNESPFYLSLSSCSNCSNF--------SRTGFKNSFKSLHISILSLFKIS 429
E+K VH ++ ++ + L S S NF S GF NS + H+ K
Sbjct: 34 ESKMVHSMFNTSDHTNHHGLFSSSRVFNFYQDSHVSSSSFGFNNSHMAYHMR-----KNM 88
Query: 430 VDSFSLTCICKSSSSPNENSGTSISPLTNFLSP*IVHSPLTFKVNSY 570
V +F + CI ++S++P+ + + +TN S + L N Y
Sbjct: 89 VSTFGMPCITQNSNNPHLSQISITQTITNSYSAIVPTYNLITSQNEY 135
>ref|NP_524716.1| stoned B; stoned [Drosophila melanogaster] gi|7512017|pir||T13353
protein stn-B - fruit fly (Drosophila melanogaster)
gi|3138879|gb|AAC16666.1| stn-B [Drosophila melanogaster]
Length = 1262
Score = 33.1 bits (74), Expect = 3.6
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = -3
Query: 611 FMVIVRNKKRVSYTYELTLKVKGEWTIQGDKKLVKGDIEVPEFSFGELDDL 459
++ +VR + R EL L++K W + G+K ++ DI VP F+ +L +
Sbjct: 1008 YIELVRFRVRPPKNRELPLQLKATWCVSGNKVELRADILVPGFTSRKLGQI 1058
>gb|EAA21517.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 830
Score = 32.7 bits (73), Expect = 4.6
Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 25/147 (17%)
Frame = +1
Query: 274 ENKKVHGFYHR---------NESPFYLSLSSCSNCS-NFSRTGFKNSFK---SLHISILS 414
++K+ + F+H N P Y+ + + N +FS F NS K + +LS
Sbjct: 395 KDKRTYSFFHVCNLLKNMNVNSLPKYIFIENVKNFELSFSFLYFINSIKDNYNFQTYLLS 454
Query: 415 LFKISVDSFSLT--CICKSSSSPNE--------NSGTSISPLTNFLSP*IVHSPLTFKVN 564
+ + + L CICK S+ N+ N + +P TN L P + L+ K
Sbjct: 455 PLQFGIPNERLRFYCICKKKSNDNDNIDLERKKNEQNNFAPYTNSLKP---RNFLSLKKK 511
Query: 565 SYV*LTRFLFRTIT--MNASPTHFVTS 639
+ +F T+T ++ + +F+TS
Sbjct: 512 NENIFPKFYTPTLTTFLDHNKKYFITS 538
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 543,326,739
Number of Sequences: 1393205
Number of extensions: 11267612
Number of successful extensions: 28874
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 27792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28853
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29704274460
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
