Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005282A_C02 KMC005282A_c02
(700 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL18927.1|AF429386_1 mevalonate disphosphate decarboxylase [... 196 2e-49
pir||T47584 diphosphomevalonate decarboxylase (EC 4.1.1.33) F24B... 188 7e-47
ref|NP_566995.1| DIPHOSPHOMEVALONATE DECARBOXYLASE - like protei... 188 7e-47
gb|AAM65192.1| diphosphomevalonate decarboxylase-like protein [A... 188 7e-47
gb|AAM64988.1| mevalonate diphosphate decarboxylase [Arabidopsis... 152 4e-36
>gb|AAL18927.1|AF429386_1 mevalonate disphosphate decarboxylase [Hevea brasiliensis]
Length = 415
Score = 196 bits (499), Expect = 2e-49
Identities = 96/127 (75%), Positives = 111/127 (86%), Gaps = 1/127 (0%)
Frame = -3
Query: 695 IEKWNRSEEAPQVAYTFDAGPNAVLIARNRQAAALLIQRLLYYFPPNSD-DLNSYIIGDK 519
+EKWNRS PQVAYTFDAGPNAVLIA NR+AAA L+Q+LL+YFPPNSD +LNSY++GDK
Sbjct: 292 VEKWNRSVGTPQVAYTFDAGPNAVLIAHNRKAAAQLLQKLLFYFPPNSDTELNSYVLGDK 351
Query: 518 SIAKDAGINGISDVEALPPPPEIKDNIPSQKYKGDVNYFICTRPGRGPVLLSDENQALLN 339
SI KDAGI + DVEALPPPPEIKD + +YKGDV+YFICTRPG+GPVLLSDE+QALL+
Sbjct: 352 SILKDAGIEDLKDVEALPPPPEIKD---APRYKGDVSYFICTRPGQGPVLLSDESQALLS 408
Query: 338 GENGLPK 318
E GLPK
Sbjct: 409 PETGLPK 415
>pir||T47584 diphosphomevalonate decarboxylase (EC 4.1.1.33) F24B22.210
[similarity] - Arabidopsis thaliana
gi|6822071|emb|CAB70999.1| DIPHOSPHOMEVALONATE
DECARBOXYLASE-like protein [Arabidopsis thaliana]
Length = 413
Score = 188 bits (477), Expect = 7e-47
Identities = 89/128 (69%), Positives = 106/128 (82%), Gaps = 1/128 (0%)
Frame = -3
Query: 698 IIEKWNRSEEAPQVAYTFDAGPNAVLIARNRQAAALLIQRLLYYFPPNSD-DLNSYIIGD 522
++EKWNRSE PQVAYTFDAGPNAVLIARNR+ A L+Q LLYYFPP SD D+ SY++GD
Sbjct: 286 LVEKWNRSEGTPQVAYTFDAGPNAVLIARNRKVAVQLLQGLLYYFPPKSDTDMKSYVVGD 345
Query: 521 KSIAKDAGINGISDVEALPPPPEIKDNIPSQKYKGDVNYFICTRPGRGPVLLSDENQALL 342
SI K+AG++G S VE L PPPEIKDNI SQ KG+V+YFICTRPG+GP++L D+ QALL
Sbjct: 346 NSILKEAGLDGASGVENLQPPPEIKDNIGSQDQKGEVSYFICTRPGKGPIVLHDQTQALL 405
Query: 341 NGENGLPK 318
+ E GLPK
Sbjct: 406 DPETGLPK 413
>ref|NP_566995.1| DIPHOSPHOMEVALONATE DECARBOXYLASE - like protein; protein id:
At3g54250.1, supported by cDNA: 37377. [Arabidopsis
thaliana]
Length = 419
Score = 188 bits (477), Expect = 7e-47
Identities = 89/128 (69%), Positives = 106/128 (82%), Gaps = 1/128 (0%)
Frame = -3
Query: 698 IIEKWNRSEEAPQVAYTFDAGPNAVLIARNRQAAALLIQRLLYYFPPNSD-DLNSYIIGD 522
++EKWNRSE PQVAYTFDAGPNAVLIARNR+ A L+Q LLYYFPP SD D+ SY++GD
Sbjct: 292 LVEKWNRSEGTPQVAYTFDAGPNAVLIARNRKVAVQLLQGLLYYFPPKSDTDMKSYVVGD 351
Query: 521 KSIAKDAGINGISDVEALPPPPEIKDNIPSQKYKGDVNYFICTRPGRGPVLLSDENQALL 342
SI K+AG++G S VE L PPPEIKDNI SQ KG+V+YFICTRPG+GP++L D+ QALL
Sbjct: 352 NSILKEAGLDGASGVENLQPPPEIKDNIGSQDQKGEVSYFICTRPGKGPIVLHDQTQALL 411
Query: 341 NGENGLPK 318
+ E GLPK
Sbjct: 412 DPETGLPK 419
>gb|AAM65192.1| diphosphomevalonate decarboxylase-like protein [Arabidopsis
thaliana]
Length = 419
Score = 188 bits (477), Expect = 7e-47
Identities = 89/128 (69%), Positives = 106/128 (82%), Gaps = 1/128 (0%)
Frame = -3
Query: 698 IIEKWNRSEEAPQVAYTFDAGPNAVLIARNRQAAALLIQRLLYYFPPNSD-DLNSYIIGD 522
++EKWNRSE PQVAYTFDAGPNAVLIARNR+ A L+Q LLYYFPP SD D+ SY++GD
Sbjct: 292 LVEKWNRSEGTPQVAYTFDAGPNAVLIARNRKVAVQLLQGLLYYFPPKSDTDMKSYVVGD 351
Query: 521 KSIAKDAGINGISDVEALPPPPEIKDNIPSQKYKGDVNYFICTRPGRGPVLLSDENQALL 342
SI K+AG++G S VE L PPPEIKDNI SQ KG+V+YFICTRPG+GP++L D+ QALL
Sbjct: 352 NSILKEAGLDGASGVENLQPPPEIKDNIGSQDQKGEVSYFICTRPGKGPIVLHDQTQALL 411
Query: 341 NGENGLPK 318
+ E GLPK
Sbjct: 412 DPETGLPK 419
>gb|AAM64988.1| mevalonate diphosphate decarboxylase [Arabidopsis thaliana]
Length = 404
Score = 152 bits (384), Expect = 4e-36
Identities = 75/128 (58%), Positives = 94/128 (72%), Gaps = 1/128 (0%)
Frame = -3
Query: 698 IIEKWNRSEEAPQVAYTFDAGPNAVLIARNRQAAALLIQRLLYYFPPNSD-DLNSYIIGD 522
++EKWNRS P++AYTFDAGPNAV+IARNR+ A L+Q LLY FPP D D+ SY++GD
Sbjct: 284 LVEKWNRSAGTPEIAYTFDAGPNAVMIARNRKVAVELLQGLLYCFPPKPDTDMKSYVLGD 343
Query: 521 KSIAKDAGINGISDVEALPPPPEIKDNIPSQKYKGDVNYFICTRPGRGPVLLSDENQALL 342
SI K+AG+ G P IKD I SQ KG+V+YFIC+RPGRGPV+L D+ QALL
Sbjct: 344 TSIVKEAGLEG-------ELPQGIKDKIGSQDQKGEVSYFICSRPGRGPVVLQDQTQALL 396
Query: 341 NGENGLPK 318
+ + GLPK
Sbjct: 397 HPQTGLPK 404
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 606,600,158
Number of Sequences: 1393205
Number of extensions: 13772366
Number of successful extensions: 35476
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 34303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35448
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31967457276
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
