Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005281A_C01 KMC005281A_c01
(511 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL38251.1| dTDP-glucose 4-6-dehydratase-like protein [Arabid... 112 5e-33
ref|NP_190920.1| dTDP-glucose 4-6-dehydratase -like protein; pro... 112 5e-33
dbj|BAB84333.2| UDP-glucuronic acid decarboxylase [Oryza sativa ... 75 7e-24
pir||S58282 dTDP-glucose 4-6-dehydratase homolog D18 - Arabidops... 70 1e-21
ref|NP_191842.1| dTDP-glucose 4-6-dehydratase homolog D18; prote... 70 1e-21
>gb|AAL38251.1| dTDP-glucose 4-6-dehydratase-like protein [Arabidopsis thaliana]
gi|28058970|gb|AAO29973.1| dTDP-glucose
4-6-dehydratase-like protein [Arabidopsis thaliana]
Length = 435
Score = 112 bits (279), Expect(2) = 5e-33
Identities = 66/128 (51%), Positives = 81/128 (62%), Gaps = 9/128 (7%)
Frame = +2
Query: 41 YSPKSTKTPDPSPDPSTTSSVNSVSSSSSIGILIGSTFFIIQPTLSRIGPHDPAS----- 205
YSPK+ K P P +GILIGSTFFI+QP+LSR+G + S
Sbjct: 25 YSPKTLKHPRSLPRSLHYLFREQRLLFILVGILIGSTFFILQPSLSRLGAAESTSLITRS 84
Query: 206 --HSHTFLPAALTNFDSTTN--RVGRIPAGIGGRRLRVVVTGGAGFVGSHLVDKLIGRGK 373
++ T P + + F+S R GR+P GIG +RLR+VVTGGAGFVGSHLVDKLIGRG
Sbjct: 85 VSYAVTDSPPSRSTFNSGGGGGRTGRVPVGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGD 144
Query: 374 DVIVIDNF 397
+VIVIDNF
Sbjct: 145 EVIVIDNF 152
Score = 50.4 bits (119), Expect(2) = 5e-33
Identities = 24/29 (82%), Positives = 24/29 (82%)
Frame = +3
Query: 423 LVHRIGNPRFELIRQDVVEPSLLEVDQIY 509
LVH NPRFELIR DVVEP LLEVDQIY
Sbjct: 160 LVHLFSNPRFELIRHDVVEPILLEVDQIY 188
>ref|NP_190920.1| dTDP-glucose 4-6-dehydratase -like protein; protein id: At3g53520.1
[Arabidopsis thaliana] gi|11270116|pir||T45892
dTDP-glucose 4-6-dehydratase-like protein - Arabidopsis
thaliana gi|6729503|emb|CAB67659.1| dTDP-glucose
4-6-dehydratase-like protein [Arabidopsis thaliana]
gi|14595662|gb|AAK70880.1|AF387787_1 UDP-glucuronic acid
decarboxylase [Arabidopsis thaliana]
Length = 433
Score = 112 bits (279), Expect(2) = 5e-33
Identities = 66/128 (51%), Positives = 81/128 (62%), Gaps = 9/128 (7%)
Frame = +2
Query: 41 YSPKSTKTPDPSPDPSTTSSVNSVSSSSSIGILIGSTFFIIQPTLSRIGPHDPAS----- 205
YSPK+ K P P +GILIGSTFFI+QP+LSR+G + S
Sbjct: 25 YSPKTLKHPRSLPRSLHYLFREQRLLFILVGILIGSTFFILQPSLSRLGAAESTSLITRS 84
Query: 206 --HSHTFLPAALTNFDSTTN--RVGRIPAGIGGRRLRVVVTGGAGFVGSHLVDKLIGRGK 373
++ T P + + F+S R GR+P GIG +RLR+VVTGGAGFVGSHLVDKLIGRG
Sbjct: 85 VSYAVTDSPPSRSTFNSGGGGGRTGRVPVGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGD 144
Query: 374 DVIVIDNF 397
+VIVIDNF
Sbjct: 145 EVIVIDNF 152
Score = 50.4 bits (119), Expect(2) = 5e-33
Identities = 24/29 (82%), Positives = 24/29 (82%)
Frame = +3
Query: 423 LVHRIGNPRFELIRQDVVEPSLLEVDQIY 509
LVH NPRFELIR DVVEP LLEVDQIY
Sbjct: 160 LVHLFSNPRFELIRHDVVEPILLEVDQIY 188
>dbj|BAB84333.2| UDP-glucuronic acid decarboxylase [Oryza sativa (japonica
cultivar-group)]
Length = 410
Score = 75.1 bits (183), Expect(3) = 7e-24
Identities = 42/90 (46%), Positives = 55/90 (60%)
Frame = +2
Query: 128 IGILIGSTFFIIQPTLSRIGPHDPASHSHTFLPAALTNFDSTTNRVGRIPAGIGGRRLRV 307
+G LI S+FF+++P L + P SH L +F S T+ +P G RV
Sbjct: 49 LGALIASSFFLLRPYLFSLSPS-----SHVPDRRPLFSFASHTSSASGVPPGFRPPPRRV 103
Query: 308 VVTGGAGFVGSHLVDKLIGRGKDVIVIDNF 397
VVTGGAGFVGSHLVD+L+ +G VIV+DNF
Sbjct: 104 VVTGGAGFVGSHLVDRLLEQGDSVIVVDNF 133
Score = 46.2 bits (108), Expect(3) = 7e-24
Identities = 20/29 (68%), Positives = 24/29 (81%)
Frame = +3
Query: 423 LVHRIGNPRFELIRQDVVEPSLLEVDQIY 509
+ H + NPRFEL+R DVVEP LLEVD+IY
Sbjct: 141 VAHHLRNPRFELLRHDVVEPILLEVDRIY 169
Score = 30.4 bits (67), Expect(3) = 7e-24
Identities = 16/24 (66%), Positives = 19/24 (78%), Gaps = 1/24 (4%)
Frame = +1
Query: 58 KDTRSLPRS-INYLLREQRLLFIL 126
K +R PRS + YLLREQRLLF+L
Sbjct: 25 KASRPGPRSWVGYLLREQRLLFVL 48
>pir||S58282 dTDP-glucose 4-6-dehydratase homolog D18 - Arabidopsis thaliana
gi|928932|emb|CAA89205.1| homolog of dTDP-glucose
4-6-dehydratases [Arabidopsis thaliana]
gi|13605583|gb|AAK32785.1|AF361617_1 AT3g62830/F26K9_260
[Arabidopsis thaliana]
gi|14595664|gb|AAK70881.1|AF387788_1 UDP-glucuronic acid
decarboxylase [Arabidopsis thaliana]
gi|1585435|prf||2124427B diamide resistance gene
Length = 445
Score = 70.5 bits (171), Expect(3) = 1e-21
Identities = 45/103 (43%), Positives = 61/103 (58%), Gaps = 13/103 (12%)
Frame = +2
Query: 128 IGILIGSTFFIIQPTLSRIGPH-DPASH-----SHTFLPAALTNFDSTT---NRVG---- 268
+GI I + F I P ++ P+ DP S +++PA + NR+G
Sbjct: 49 VGIAIATLVFTIFPRSTQSTPYSDPFSGYGIRPDESYVPAIQAQRKPSLEYLNRIGATGG 108
Query: 269 RIPAGIGGRRLRVVVTGGAGFVGSHLVDKLIGRGKDVIVIDNF 397
+IP G+ + LRVVVTGGAGFVGSHLVD+L+ RG VIV+DNF
Sbjct: 109 KIPLGLKRKGLRVVVTGGAGFVGSHLVDRLMARGDTVIVVDNF 151
Score = 46.6 bits (109), Expect(3) = 1e-21
Identities = 23/35 (65%), Positives = 26/35 (73%)
Frame = +3
Query: 405 REEGVGLVHRIGNPRFELIRQDVVEPSLLEVDQIY 509
R+E V +H NP FE+IR DVVEP LLEVDQIY
Sbjct: 155 RKENV--MHHFSNPNFEMIRHDVVEPILLEVDQIY 187
Score = 26.9 bits (58), Expect(3) = 1e-21
Identities = 10/19 (52%), Positives = 16/19 (83%)
Frame = +1
Query: 70 SLPRSINYLLREQRLLFIL 126
++ R + Y+LREQRL+F+L
Sbjct: 30 TVTRPMRYMLREQRLIFVL 48
>ref|NP_191842.1| dTDP-glucose 4-6-dehydratase homolog D18; protein id: At3g62830.1
[Arabidopsis thaliana] gi|11270077|pir||T48072
dTDP-glucose 4-6-dehydratase homolog D18 - Arabidopsis
thaliana gi|7362763|emb|CAB83133.1| dTDP-glucose
4-6-dehydratase homolog D18 [Arabidopsis thaliana]
gi|23505953|gb|AAN28836.1| At3g62830/F26K9_260
[Arabidopsis thaliana]
Length = 445
Score = 70.5 bits (171), Expect(3) = 1e-21
Identities = 45/103 (43%), Positives = 61/103 (58%), Gaps = 13/103 (12%)
Frame = +2
Query: 128 IGILIGSTFFIIQPTLSRIGPH-DPASH-----SHTFLPAALTNFDSTT---NRVG---- 268
+GI I + F I P ++ P+ DP S +++PA + NR+G
Sbjct: 49 VGIAIATLVFTIFPRSTQSTPYSDPFSGYGIRPDESYVPAIQAQRKPSLEYLNRIGATGG 108
Query: 269 RIPAGIGGRRLRVVVTGGAGFVGSHLVDKLIGRGKDVIVIDNF 397
+IP G+ + LRVVVTGGAGFVGSHLVD+L+ RG VIV+DNF
Sbjct: 109 KIPLGLKRKGLRVVVTGGAGFVGSHLVDRLMARGDTVIVVDNF 151
Score = 46.6 bits (109), Expect(3) = 1e-21
Identities = 23/35 (65%), Positives = 26/35 (73%)
Frame = +3
Query: 405 REEGVGLVHRIGNPRFELIRQDVVEPSLLEVDQIY 509
R+E V +H NP FE+IR DVVEP LLEVDQIY
Sbjct: 155 RKENV--MHHFSNPNFEMIRHDVVEPILLEVDQIY 187
Score = 26.9 bits (58), Expect(3) = 1e-21
Identities = 10/19 (52%), Positives = 16/19 (83%)
Frame = +1
Query: 70 SLPRSINYLLREQRLLFIL 126
++ R + Y+LREQRL+F+L
Sbjct: 30 TVTRPMRYMLREQRLIFVL 48
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 584,060,058
Number of Sequences: 1393205
Number of extensions: 17144070
Number of successful extensions: 222659
Number of sequences better than 10.0: 7402
Number of HSP's better than 10.0 without gapping: 113653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188972
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
