Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005279A_C01 KMC005279A_c01
(539 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_029947.2| E2, ubiquitin-conjugating enzyme, putative; pro... 36 0.26
ref|NP_179284.1| putative ubiquitin-conjugating enzyme; protein ... 35 0.44
gb|AAG52276.1|AC019018_13 putative ubiquitin-conjugating enzyme;... 33 2.2
dbj|BAC42437.1| putative ubiquitin-conjugating enzyme [Arabidops... 33 2.2
pir||G96570 hypothetical protein F8L10.11 [imported] - Arabidops... 33 2.2
>ref|NP_029947.2| E2, ubiquitin-conjugating enzyme, putative; protein id: At2g33770.1,
supported by cDNA: gi_18377677, supported by cDNA:
gi_20259098 [Arabidopsis thaliana]
gi|18377678|gb|AAL66989.1| putative E2,
ubiquitin-conjugating enzyme [Arabidopsis thaliana]
gi|20259099|gb|AAM14265.1| putative ubiquitin-conjugating
enzyme E2 [Arabidopsis thaliana]
Length = 907
Score = 36.2 bits (82), Expect = 0.26
Identities = 25/74 (33%), Positives = 38/74 (50%)
Frame = -1
Query: 539 YRNRAYFILTACPLYTEGAPVGSVAHNLLQSQSDDSIPKSQTDFQEPVRRMMNTLIAFFT 360
+ +RA +L AC Y EG PVGS A+ LQ S + T F+ + ++ L+ F+
Sbjct: 840 FTHRAQHVLAACKAYMEGVPVGSSAN--LQGNS----TTNSTGFKIMLSKLYPKLLEAFS 893
Query: 359 KNGSTDCEEFRSPE 318
+ G DC + PE
Sbjct: 894 EIG-VDCVQEIGPE 906
>ref|NP_179284.1| putative ubiquitin-conjugating enzyme; protein id: At2g16920.1
[Arabidopsis thaliana] gi|25411753|pir||H84545 probable
ubiquitin-conjugating enzyme [imported] - Arabidopsis
thaliana gi|3757521|gb|AAC64223.1| putative
ubiquitin-conjugating enzyme [Arabidopsis thaliana]
Length = 1102
Score = 35.4 bits (80), Expect = 0.44
Identities = 19/71 (26%), Positives = 35/71 (48%)
Frame = -1
Query: 539 YRNRAYFILTACPLYTEGAPVGSVAHNLLQSQSDDSIPKSQTDFQEPVRRMMNTLIAFFT 360
+R R Y+IL AC Y +G +GS+ + S + F+ + ++ L + +
Sbjct: 1028 FRKRGYYILKACDAYMKGYLIGSLTKDASVIDERSSANSTSVGFKLMLAKIAPKLFSALS 1087
Query: 359 KNGSTDCEEFR 327
+ G+ DC EF+
Sbjct: 1088 EVGA-DCNEFQ 1097
>gb|AAG52276.1|AC019018_13 putative ubiquitin-conjugating enzyme; 121361-120434 [Arabidopsis
thaliana]
Length = 244
Score = 33.1 bits (74), Expect = 2.2
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = -1
Query: 539 YRNRAYFILTACPLYTEGAPVGSVAHNLLQSQSDDSIPKSQTDFQEPVRRMMNTLIAFFT 360
Y R++ I+ AC Y GAP+GS+ +Q + + F+ V M T++ F
Sbjct: 150 YFVRSHDIVKACNAYKAGAPLGSMVKGGVQ-DLEQARQSGSKKFKTDVASFMQTVVDEFV 208
Query: 359 KNGSTDCEEFRSPEI 315
K G + E P +
Sbjct: 209 KLGVKELAEKPKPPV 223
>dbj|BAC42437.1| putative ubiquitin-conjugating enzyme [Arabidopsis thaliana]
gi|29028948|gb|AAO64853.1| At1g53020 [Arabidopsis
thaliana]
Length = 543
Score = 33.1 bits (74), Expect = 2.2
Identities = 21/73 (28%), Positives = 34/73 (45%)
Frame = -1
Query: 539 YRNRAYFILTACPLYTEGAPVGSVAHNLLQSQSDDSIPKSQTDFQEPVRRMMNTLIAFFT 360
Y R++ I+ AC Y GAP+GS+ +Q +++ F+ V M T++ F
Sbjct: 449 YFVRSHDIVKACNAYKAGAPLGSMVKGGVQ-DLEEARQSGSKKFKTDVASFMQTVVDEFV 507
Query: 359 KNGSTDCEEFRSP 321
K G + E P
Sbjct: 508 KLGVKELAEKPEP 520
>pir||G96570 hypothetical protein F8L10.11 [imported] - Arabidopsis thaliana
gi|9454541|gb|AAF87864.1|AC022520_8 Similar to
ubiquitin-conjugating enzymes [Arabidopsis thaliana]
Length = 543
Score = 33.1 bits (74), Expect = 2.2
Identities = 21/73 (28%), Positives = 34/73 (45%)
Frame = -1
Query: 539 YRNRAYFILTACPLYTEGAPVGSVAHNLLQSQSDDSIPKSQTDFQEPVRRMMNTLIAFFT 360
Y R++ I+ AC Y GAP+GS+ +Q +++ F+ V M T++ F
Sbjct: 449 YFVRSHDIVKACNAYKAGAPLGSMVKGGVQ-DLEEARQSGSKKFKTDVASFMQTVVDEFV 507
Query: 359 KNGSTDCEEFRSP 321
K G + E P
Sbjct: 508 KLGVKELAEKPEP 520
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 443,273,389
Number of Sequences: 1393205
Number of extensions: 9136441
Number of successful extensions: 24365
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 23972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24363
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
