Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005276A_C01 KMC005276A_c01
(740 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567723.1| putative protein; protein id: At4g25570.1, supp... 182 6e-45
pir||T05790 hypothetical protein M7J2.60 - Arabidopsis thaliana ... 182 6e-45
pir||E85295 hypothetical protein AT4g25570 [imported] - Arabidop... 182 6e-45
gb|AAM62824.1| cytochrome b561 [Arabidopsis thaliana] 182 6e-45
dbj|BAB21522.1| cytochrome b561 [Arabidopsis thaliana] 182 6e-45
>ref|NP_567723.1| putative protein; protein id: At4g25570.1, supported by cDNA:
15975., supported by cDNA: gi_12597244 [Arabidopsis
thaliana] gi|21539471|gb|AAM53288.1| putative protein
[Arabidopsis thaliana] gi|25084153|gb|AAN72187.1|
putative protein [Arabidopsis thaliana]
Length = 239
Score = 182 bits (461), Expect = 6e-45
Identities = 85/119 (71%), Positives = 101/119 (84%)
Frame = -1
Query: 740 AFKIHNESGIANLYSLHSWLGIGVISLYGVQFIFGFVTFFYPGGSPAIKRDTLPWHVLLG 561
AFK HNES I NLYSLHSW+GIGVISLYG Q+++ F+ FF+PGGS +K LPWH +LG
Sbjct: 101 AFKNHNESHIPNLYSLHSWIGIGVISLYGFQWVYSFIVFFFPGGSTNLKSGLLPWHAMLG 160
Query: 560 LFIYILAIGTASLGFLEKLTFLESSGLAKYGSEALLVNFTAIITILFGTFVVLSAISEA 384
LF+YILA+G A+LGFLEKLTFLE+ GL KYGSEA L+NFTAIITILFG FVVL+A +E+
Sbjct: 161 LFVYILAVGNAALGFLEKLTFLENGGLDKYGSEAFLINFTAIITILFGAFVVLTASAES 219
>pir||T05790 hypothetical protein M7J2.60 - Arabidopsis thaliana
gi|2980793|emb|CAA18169.1| putative protein [Arabidopsis
thaliana]
Length = 280
Score = 182 bits (461), Expect = 6e-45
Identities = 85/119 (71%), Positives = 101/119 (84%)
Frame = -1
Query: 740 AFKIHNESGIANLYSLHSWLGIGVISLYGVQFIFGFVTFFYPGGSPAIKRDTLPWHVLLG 561
AFK HNES I NLYSLHSW+GIGVISLYG Q+++ F+ FF+PGGS +K LPWH +LG
Sbjct: 142 AFKNHNESHIPNLYSLHSWIGIGVISLYGFQWVYSFIVFFFPGGSTNLKSGLLPWHAMLG 201
Query: 560 LFIYILAIGTASLGFLEKLTFLESSGLAKYGSEALLVNFTAIITILFGTFVVLSAISEA 384
LF+YILA+G A+LGFLEKLTFLE+ GL KYGSEA L+NFTAIITILFG FVVL+A +E+
Sbjct: 202 LFVYILAVGNAALGFLEKLTFLENGGLDKYGSEAFLINFTAIITILFGAFVVLTASAES 260
>pir||E85295 hypothetical protein AT4g25570 [imported] - Arabidopsis thaliana
gi|7269407|emb|CAB81367.1| putative protein [Arabidopsis
thaliana]
Length = 280
Score = 182 bits (461), Expect = 6e-45
Identities = 85/119 (71%), Positives = 101/119 (84%)
Frame = -1
Query: 740 AFKIHNESGIANLYSLHSWLGIGVISLYGVQFIFGFVTFFYPGGSPAIKRDTLPWHVLLG 561
AFK HNES I NLYSLHSW+GIGVISLYG Q+++ F+ FF+PGGS +K LPWH +LG
Sbjct: 142 AFKNHNESHIPNLYSLHSWIGIGVISLYGFQWVYSFIVFFFPGGSTNLKSGLLPWHAMLG 201
Query: 560 LFIYILAIGTASLGFLEKLTFLESSGLAKYGSEALLVNFTAIITILFGTFVVLSAISEA 384
LF+YILA+G A+LGFLEKLTFLE+ GL KYGSEA L+NFTAIITILFG FVVL+A +E+
Sbjct: 202 LFVYILAVGNAALGFLEKLTFLENGGLDKYGSEAFLINFTAIITILFGAFVVLTASAES 260
>gb|AAM62824.1| cytochrome b561 [Arabidopsis thaliana]
Length = 237
Score = 182 bits (461), Expect = 6e-45
Identities = 85/119 (71%), Positives = 101/119 (84%)
Frame = -1
Query: 740 AFKIHNESGIANLYSLHSWLGIGVISLYGVQFIFGFVTFFYPGGSPAIKRDTLPWHVLLG 561
AFK HNES I NLYSLHSW+GIGVISLYG Q+++ F+ FF+PGGS +K LPWH +LG
Sbjct: 101 AFKNHNESHIPNLYSLHSWIGIGVISLYGFQWVYSFIVFFFPGGSTNLKSGLLPWHAMLG 160
Query: 560 LFIYILAIGTASLGFLEKLTFLESSGLAKYGSEALLVNFTAIITILFGTFVVLSAISEA 384
LF+YILA+G A+LGFLEKLTFLE+ GL KYGSEA L+NFTAIITILFG FVVL+A +E+
Sbjct: 161 LFVYILAVGNAALGFLEKLTFLENGGLDKYGSEAFLINFTAIITILFGAFVVLTASAES 219
>dbj|BAB21522.1| cytochrome b561 [Arabidopsis thaliana]
Length = 237
Score = 182 bits (461), Expect = 6e-45
Identities = 85/119 (71%), Positives = 101/119 (84%)
Frame = -1
Query: 740 AFKIHNESGIANLYSLHSWLGIGVISLYGVQFIFGFVTFFYPGGSPAIKRDTLPWHVLLG 561
AFK HNES I NLYSLHSW+GIGVISLYG Q+++ F+ FF+PGGS +K LPWH +LG
Sbjct: 99 AFKNHNESHIPNLYSLHSWIGIGVISLYGFQWVYSFIVFFFPGGSTNLKSGLLPWHAMLG 158
Query: 560 LFIYILAIGTASLGFLEKLTFLESSGLAKYGSEALLVNFTAIITILFGTFVVLSAISEA 384
LF+YILA+G A+LGFLEKLTFLE+ GL KYGSEA L+NFTAIITILFG FVVL+A +E+
Sbjct: 159 LFVYILAVGNAALGFLEKLTFLENGGLDKYGSEAFLINFTAIITILFGAFVVLTASAES 217
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 630,970,108
Number of Sequences: 1393205
Number of extensions: 14250114
Number of successful extensions: 36987
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 35181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36958
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35469585522
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
