Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005268A_C01 KMC005268A_c01
(539 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S04125 chlorophyll a/b-binding protein type III precursor -... 134 5e-44
sp|P27522|CB13_LYCES Chlorophyll A-B binding protein 8, chloropl... 132 2e-43
ref|NP_176347.1| light-harvesting chlorophyll a/b binding protei... 127 1e-42
pir||T06411 probable chlorophyll a/b-binding protein type III pr... 131 1e-41
gb|AAA18206.1| PSI type III chlorophyll a/b-binding protein 123 2e-41
>pir||S04125 chlorophyll a/b-binding protein type III precursor - tomato
gi|226872|prf||1609235A chlorophyll a/b binding protein
Length = 273
Score = 134 bits (337), Expect(2) = 5e-44
Identities = 68/88 (77%), Positives = 76/88 (86%)
Frame = +1
Query: 97 SSLAFSAEAAKQSLGARSLQSPIGSSRKGSFIVKAASTPPVKQGANRPWWFASKQSLSYL 276
SS++ SAEAA+Q +G+R QS +RK SF+V+AASTPPVKQGANR WFASKQSLSYL
Sbjct: 10 SSISTSAEAARQIIGSRISQSV---TRKASFVVRAASTPPVKQGANRQLWFASKQSLSYL 66
Query: 277 DGSLPGDFGFDPLGLSDPEGTGGFIETK 360
DGSLPGDFGFDPLGLSDPEGTGGFIE K
Sbjct: 67 DGSLPGDFGFDPLGLSDPEGTGGFIEPK 94
Score = 65.1 bits (157), Expect(2) = 5e-44
Identities = 35/54 (64%), Positives = 41/54 (75%), Gaps = 5/54 (9%)
Frame = +3
Query: 378 EIINGRFAMLGAAGAIAPEILGKAGLIPEEETALPW-----IPRPELHSTWQES 524
E+INGRFAMLGAAGAIAPEILGKAGLIP +ETAL W IP ++ W ++
Sbjct: 100 EVINGRFAMLGAAGAIAPEILGKAGLIP-QETALAWFQTGVIPPAGTYNYWADN 152
>sp|P27522|CB13_LYCES Chlorophyll A-B binding protein 8, chloroplast precursor (LHCI type
III CAB-8) gi|19182|emb|CAA33330.1| Type III chlorophyll
a/b-binding protein [Lycopersicon esculentum]
Length = 273
Score = 132 bits (332), Expect(2) = 2e-43
Identities = 67/88 (76%), Positives = 75/88 (85%)
Frame = +1
Query: 97 SSLAFSAEAAKQSLGARSLQSPIGSSRKGSFIVKAASTPPVKQGANRPWWFASKQSLSYL 276
SS++ SAEAA+Q +G+R QS +RK SF+V+AASTPPVKQGANR WFASKQSLSYL
Sbjct: 10 SSISTSAEAARQIIGSRISQSV---TRKASFVVRAASTPPVKQGANRQLWFASKQSLSYL 66
Query: 277 DGSLPGDFGFDPLGLSDPEGTGGFIETK 360
DG LPGDFGFDPLGLSDPEGTGGFIE K
Sbjct: 67 DGRLPGDFGFDPLGLSDPEGTGGFIEPK 94
Score = 65.1 bits (157), Expect(2) = 2e-43
Identities = 35/54 (64%), Positives = 41/54 (75%), Gaps = 5/54 (9%)
Frame = +3
Query: 378 EIINGRFAMLGAAGAIAPEILGKAGLIPEEETALPW-----IPRPELHSTWQES 524
E+INGRFAMLGAAGAIAPEILGKAGLIP +ETAL W IP ++ W ++
Sbjct: 100 EVINGRFAMLGAAGAIAPEILGKAGLIP-QETALAWFQTGVIPPAGTYNYWADN 152
>ref|NP_176347.1| light-harvesting chlorophyll a/b binding protein; protein id:
At1g61520.1, supported by cDNA: 25124., supported by
cDNA: gi_16649018, supported by cDNA: gi_20260043,
supported by cDNA: gi_430946 [Arabidopsis thaliana]
gi|25299020|pir||E96640 PSI type III chlorophyll
a/b-binding protein [imported] - Arabidopsis thaliana
gi|4585882|gb|AAD25555.1|AC005850_12 PSI type III
chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16649019|gb|AAL24361.1| PSI type III chlorophyll
a/b-binding protein [Arabidopsis thaliana]
gi|20260044|gb|AAM13369.1| PSI type III chlorophyll
a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 127 bits (320), Expect(2) = 1e-42
Identities = 62/88 (70%), Positives = 72/88 (81%)
Frame = +1
Query: 97 SSLAFSAEAAKQSLGARSLQSPIGSSRKGSFIVKAASTPPVKQGANRPWWFASKQSLSYL 276
SSL S + A+Q G++ + S S +K SF+VKAA+TPPVKQGANRP WFAS QSLSYL
Sbjct: 9 SSLTSSVQTARQIFGSKPVAS--ASQKKSSFVVKAAATPPVKQGANRPLWFASSQSLSYL 66
Query: 277 DGSLPGDFGFDPLGLSDPEGTGGFIETK 360
DGSLPGD+GFDPLGLSDPEGTGGFIE +
Sbjct: 67 DGSLPGDYGFDPLGLSDPEGTGGFIEPR 94
Score = 67.4 bits (163), Expect(2) = 1e-42
Identities = 37/54 (68%), Positives = 41/54 (75%), Gaps = 5/54 (9%)
Frame = +3
Query: 378 EIINGRFAMLGAAGAIAPEILGKAGLIPEEETALPW-----IPRPELHSTWQES 524
EIINGRFAMLGAAGAIAPEILGKAGLIP ETALPW IP ++ W ++
Sbjct: 100 EIINGRFAMLGAAGAIAPEILGKAGLIP-AETALPWFQTGVIPPAGTYTYWADN 152
>pir||T06411 probable chlorophyll a/b-binding protein type III precursor -
garden pea chloroplast gi|309673|gb|AAA84545.1| light
harvesting protein
Length = 275
Score = 131 bits (330), Expect(2) = 1e-41
Identities = 67/89 (75%), Positives = 76/89 (85%), Gaps = 1/89 (1%)
Frame = +1
Query: 97 SSLAFSAEAAKQSLGARSLQSPIGSSRKGSFIVKAASTPPVKQGA-NRPWWFASKQSLSY 273
SSL F+AEA +QS ARSL S +G SRKG +V+AA+TPPVKQG +RP WFASKQSLSY
Sbjct: 10 SSLTFAAEAVRQSFRARSLPSSVGCSRKG--LVRAAATPPVKQGGVDRPLWFASKQSLSY 67
Query: 274 LDGSLPGDFGFDPLGLSDPEGTGGFIETK 360
LDGSLPGD+GFDPLGLSDPEGTGGFIE +
Sbjct: 68 LDGSLPGDYGFDPLGLSDPEGTGGFIEPR 96
Score = 60.1 bits (144), Expect(2) = 1e-41
Identities = 32/54 (59%), Positives = 38/54 (70%), Gaps = 5/54 (9%)
Frame = +3
Query: 378 EIINGRFAMLGAAGAIAPEILGKAGLIPEEETALPW-----IPRPELHSTWQES 524
E+INGRFAMLGA GAIAPE LGK GLIP +ETAL W IP ++ W ++
Sbjct: 102 EVINGRFAMLGAVGAIAPEYLGKVGLIP-QETALAWFQTGVIPPAGTYNYWADN 154
>gb|AAA18206.1| PSI type III chlorophyll a/b-binding protein
Length = 273
Score = 123 bits (308), Expect(2) = 2e-41
Identities = 60/88 (68%), Positives = 70/88 (79%)
Frame = +1
Query: 97 SSLAFSAEAAKQSLGARSLQSPIGSSRKGSFIVKAASTPPVKQGANRPWWFASKQSLSYL 276
SSL S + A+Q G++ + S S +K SF+VKAA+ PPVKQGANRP W AS QSLSYL
Sbjct: 9 SSLTSSVQTARQIFGSKPVAS--ASQKKSSFVVKAAAAPPVKQGANRPLWVASSQSLSYL 66
Query: 277 DGSLPGDFGFDPLGLSDPEGTGGFIETK 360
DGSLPGD+GFDPLGLSDPEGTGGFIE +
Sbjct: 67 DGSLPGDYGFDPLGLSDPEGTGGFIEPR 94
Score = 67.4 bits (163), Expect(2) = 2e-41
Identities = 37/54 (68%), Positives = 41/54 (75%), Gaps = 5/54 (9%)
Frame = +3
Query: 378 EIINGRFAMLGAAGAIAPEILGKAGLIPEEETALPW-----IPRPELHSTWQES 524
EIINGRFAMLGAAGAIAPEILGKAGLIP ETALPW IP ++ W ++
Sbjct: 100 EIINGRFAMLGAAGAIAPEILGKAGLIP-AETALPWFQTGVIPPAGTYTYWADN 152
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 511,042,383
Number of Sequences: 1393205
Number of extensions: 11555668
Number of successful extensions: 43699
Number of sequences better than 10.0: 330
Number of HSP's better than 10.0 without gapping: 40800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43646
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
