Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005267A_C01 KMC005267A_c01
(537 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190012.1| CCR4-associated factor 1-like protein; protein ... 75 2e-25
ref|NP_197617.1| CCR4-associated factor-like protein; protein id... 72 1e-23
ref|NP_565735.1| putative CCR4-associated factor; protein id: At... 62 5e-20
ref|NP_173044.1| BTG1 binding factor 1, putative; protein id: At... 64 2e-19
ref|NP_196657.1| CCR4-ASSOCIATED FACTOR -like protein; protein ... 62 9e-19
>ref|NP_190012.1| CCR4-associated factor 1-like protein; protein id: At3g44260.1
[Arabidopsis thaliana] gi|11288396|pir||T49142
CCR4-associated factor 1-like protein - Arabidopsis
thaliana gi|7649377|emb|CAB88994.1| CCR4-associated
factor 1-like protein [Arabidopsis thaliana]
gi|15292829|gb|AAK92783.1| putative CCR4-associated
factor 1 [Arabidopsis thaliana]
gi|21436313|gb|AAM51295.1| putative CCR4-associated
factor 1 [Arabidopsis thaliana]
Length = 280
Score = 74.7 bits (182), Expect(2) = 2e-25
Identities = 37/55 (67%), Positives = 42/55 (76%), Gaps = 2/55 (3%)
Frame = +2
Query: 377 TALKANVDRLNLIQIGLSLSEHKGKLPTLGTP--NSYIWEFNFRDFDVARDDHAP 535
T LKANVD L+LIQ+GL+LS+ G LP LG +IWEFNFRDFDVARD HAP
Sbjct: 69 TLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAP 123
Score = 62.4 bits (150), Expect(2) = 2e-25
Identities = 27/43 (62%), Positives = 34/43 (78%)
Frame = +1
Query: 196 SILTRSVWSSNLESEFQWIRSLIDAYPLISMDTEFPGVIVRPD 324
+++TR VW+ NLESEF+ I +ID YP ISMDTEFPGVI + D
Sbjct: 16 TVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSD 58
>ref|NP_197617.1| CCR4-associated factor-like protein; protein id: At5g22250.1,
supported by cDNA: gi_17381057 [Arabidopsis thaliana]
gi|9757805|dbj|BAB08323.1| CCR4-associated factor-like
protein [Arabidopsis thaliana]
gi|17381058|gb|AAL36341.1| putative CCR4-associated
factor [Arabidopsis thaliana] gi|25054979|gb|AAN71961.1|
putative CCR4-associated factor [Arabidopsis thaliana]
Length = 278
Score = 72.0 bits (175), Expect(2) = 1e-23
Identities = 35/53 (66%), Positives = 41/53 (77%), Gaps = 2/53 (3%)
Frame = +2
Query: 383 LKANVDRLNLIQIGLSLSEHKGKLPTLGTPNS--YIWEFNFRDFDVARDDHAP 535
LK+NVD L+LIQ+GL+LS+ G LP LG + YIWEFNFRDFDV RD HAP
Sbjct: 69 LKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAP 121
Score = 58.9 bits (141), Expect(2) = 1e-23
Identities = 26/42 (61%), Positives = 32/42 (75%)
Frame = +1
Query: 199 ILTRSVWSSNLESEFQWIRSLIDAYPLISMDTEFPGVIVRPD 324
I+ R VW+ NLESEF IR +++ YP ISMDTEFPGVI + D
Sbjct: 12 IVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKAD 53
>ref|NP_565735.1| putative CCR4-associated factor; protein id: At2g32070.1, supported
by cDNA: gi_15293024 [Arabidopsis thaliana]
gi|15293025|gb|AAK93623.1| putative CCR4-associated
factor [Arabidopsis thaliana] gi|20197620|gb|AAD15397.2|
putative CCR4-associated factor [Arabidopsis thaliana]
gi|23296713|gb|AAN13153.1| putative CCR4-associated
factor [Arabidopsis thaliana]
Length = 275
Score = 62.4 bits (150), Expect(2) = 5e-20
Identities = 29/51 (56%), Positives = 38/51 (73%), Gaps = 1/51 (1%)
Frame = +2
Query: 383 LKANVDRLNLIQIGLSLSEHKGKLPTLGTPNSY-IWEFNFRDFDVARDDHA 532
LK NV+ L +IQ+GL+ S+ KG LPT GT N Y IW+FNFR+FD+ D +A
Sbjct: 65 LKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYA 115
Score = 56.6 bits (135), Expect(2) = 5e-20
Identities = 23/42 (54%), Positives = 31/42 (73%)
Frame = +1
Query: 196 SILTRSVWSSNLESEFQWIRSLIDAYPLISMDTEFPGVIVRP 321
SI R VW+ NLESE IR ++D +P ++MDTEFPG++ RP
Sbjct: 9 SIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRP 50
>ref|NP_173044.1| BTG1 binding factor 1, putative; protein id: At1g15920.1, supported
by cDNA: gi_19347886, supported by cDNA: gi_21281270
[Arabidopsis thaliana] gi|25363303|pir||F86293 T24D18.2
protein - Arabidopsis thaliana
gi|6587798|gb|AAF18489.1|AC010924_2 Similar to gi|Q60809
CCR4-associated factor 1 (CAF1) from Mus musculus. EST
gb|Z26822 comes from this gene. [Arabidopsis thaliana]
gi|19347887|gb|AAL86000.1| putative BTG1 binding factor
1 [Arabidopsis thaliana] gi|21281271|gb|AAM45088.1|
putative BTG1 binding factor 1 [Arabidopsis thaliana]
Length = 286
Score = 63.5 bits (153), Expect(2) = 2e-19
Identities = 29/47 (61%), Positives = 36/47 (75%)
Frame = +2
Query: 383 LKANVDRLNLIQIGLSLSEHKGKLPTLGTPNSYIWEFNFRDFDVARD 523
LKANV+ L LIQ+GL+LS+ KG LPT GT IW+FNFR+F+V D
Sbjct: 75 LKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISD 121
Score = 53.1 bits (126), Expect(2) = 2e-19
Identities = 23/56 (41%), Positives = 35/56 (62%)
Frame = +1
Query: 172 PAMPQSNGSILTRSVWSSNLESEFQWIRSLIDAYPLISMDTEFPGVIVRPDTADPS 339
P + + +I R VW+ NLE E I ID +P ++MDTEFPG++ + TA+P+
Sbjct: 5 PNPEEEDDTIEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPN 60
>ref|NP_196657.1| CCR4-ASSOCIATED FACTOR -like protein; protein id: At5g10960.1,
supported by cDNA: gi_15292842 [Arabidopsis thaliana]
gi|11288398|pir||T50805 CCR4-ASSOCIATED FACTOR-like
protein - Arabidopsis thaliana
gi|8979730|emb|CAB96851.1| CCR4-ASSOCIATED FACTOR-like
protein [Arabidopsis thaliana]
gi|23296319|gb|AAN13040.1| putative CCR4-associated
factor [Arabidopsis thaliana]
Length = 277
Score = 62.0 bits (149), Expect(2) = 9e-19
Identities = 28/55 (50%), Positives = 37/55 (66%)
Frame = +2
Query: 368 LSSTALKANVDRLNLIQIGLSLSEHKGKLPTLGTPNSYIWEFNFRDFDVARDDHA 532
L+ LK NVD L LIQ+GL+ S+ G LPT GT IW+FNFR+F++ D +A
Sbjct: 60 LNYRTLKENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYA 114
Score = 52.8 bits (125), Expect(2) = 9e-19
Identities = 22/42 (52%), Positives = 30/42 (71%)
Frame = +1
Query: 196 SILTRSVWSSNLESEFQWIRSLIDAYPLISMDTEFPGVIVRP 321
SI+ R VW NL EF IR ++D + I+MDTEFPGV+++P
Sbjct: 9 SIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKP 50
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 553,756,142
Number of Sequences: 1393205
Number of extensions: 14709466
Number of successful extensions: 115211
Number of sequences better than 10.0: 982
Number of HSP's better than 10.0 without gapping: 73703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105022
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
