Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005266A_C01 KMC005266A_c01
(408 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S33612 isocitrate dehydrogenase (NADP) (EC 1.1.1.42) - soybean 146 5e-35
gb|AAA33978.1| NADPH-specific isocitrate dehydrogenase 146 5e-35
sp|Q06197|IDHC_SOYBN ISOCITRATE DEHYDROGENASE [NADP] (OXALOSUCCI... 146 5e-35
pir||S28423 isocitrate dehydrogenase (NADP) (EC 1.1.1.42) - alfalfa 146 7e-35
sp|Q40345|IDHP_MEDSA ISOCITRATE DEHYDROGENASE [NADP], CHLOROPLAS... 146 7e-35
>pir||S33612 isocitrate dehydrogenase (NADP) (EC 1.1.1.42) - soybean
Length = 451
Score = 146 bits (369), Expect = 5e-35
Identities = 70/76 (92%), Positives = 72/76 (94%)
Frame = +2
Query: 179 PVWELDIKYLDLGLPYRDETDDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKQMW 358
P ELDIKY DLGLPYRDETDDKVT+ESAEATLKYNVAIKCATITPDEARVKEFGLK MW
Sbjct: 74 PFLELDIKYYDLGLPYRDETDDKVTIESAEATLKYNVAIKCATITPDEARVKEFGLKSMW 133
Query: 359 RSPNGTIRNILNGTVF 406
+SPNGTIRNILNGTVF
Sbjct: 134 KSPNGTIRNILNGTVF 149
Score = 45.4 bits (106), Expect = 2e-04
Identities = 32/67 (47%), Positives = 38/67 (55%), Gaps = 3/67 (4%)
Frame = +1
Query: 25 SFLPSFHRRSDSQTMA---FDKIKVANPIVENGREE*NSDFVGIWKSIKDKLILPCLGAG 195
S L + +S +T+A F KIKVANPIVE +E IWKSIKDKLILP L
Sbjct: 23 SHLTFYSSQSQIRTLAMAAFQKIKVANPIVEMDGDEMTRV---IWKSIKDKLILPFLELD 79
Query: 196 HQVLGLG 216
+ LG
Sbjct: 80 IKYYDLG 86
>gb|AAA33978.1| NADPH-specific isocitrate dehydrogenase
Length = 441
Score = 146 bits (369), Expect = 5e-35
Identities = 70/76 (92%), Positives = 72/76 (94%)
Frame = +2
Query: 179 PVWELDIKYLDLGLPYRDETDDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKQMW 358
P ELDIKY DLGLPYRDETDDKVT+ESAEATLKYNVAIKCATITPDEARVKEFGLK MW
Sbjct: 64 PFLELDIKYYDLGLPYRDETDDKVTIESAEATLKYNVAIKCATITPDEARVKEFGLKSMW 123
Query: 359 RSPNGTIRNILNGTVF 406
+SPNGTIRNILNGTVF
Sbjct: 124 KSPNGTIRNILNGTVF 139
Score = 45.4 bits (106), Expect = 2e-04
Identities = 32/67 (47%), Positives = 38/67 (55%), Gaps = 3/67 (4%)
Frame = +1
Query: 25 SFLPSFHRRSDSQTMA---FDKIKVANPIVENGREE*NSDFVGIWKSIKDKLILPCLGAG 195
S L + +S +T+A F KIKVANPIVE +E IWKSIKDKLILP L
Sbjct: 13 SHLTFYSSQSQIRTLAMAAFQKIKVANPIVEMDGDEMTRV---IWKSIKDKLILPFLELD 69
Query: 196 HQVLGLG 216
+ LG
Sbjct: 70 IKYYDLG 76
>sp|Q06197|IDHC_SOYBN ISOCITRATE DEHYDROGENASE [NADP] (OXALOSUCCINATE DECARBOXYLASE)
(IDH) (NADP+-SPECIFIC ICDH) (IDP)
Length = 413
Score = 146 bits (369), Expect = 5e-35
Identities = 70/76 (92%), Positives = 72/76 (94%)
Frame = +2
Query: 179 PVWELDIKYLDLGLPYRDETDDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKQMW 358
P ELDIKY DLGLPYRDETDDKVT+ESAEATLKYNVAIKCATITPDEARVKEFGLK MW
Sbjct: 36 PFLELDIKYYDLGLPYRDETDDKVTIESAEATLKYNVAIKCATITPDEARVKEFGLKSMW 95
Query: 359 RSPNGTIRNILNGTVF 406
+SPNGTIRNILNGTVF
Sbjct: 96 KSPNGTIRNILNGTVF 111
Score = 44.7 bits (104), Expect = 3e-04
Identities = 28/49 (57%), Positives = 30/49 (61%)
Frame = +1
Query: 70 AFDKIKVANPIVENGREE*NSDFVGIWKSIKDKLILPCLGAGHQVLGLG 216
AF KIKVANPIVE +E IWKSIKDKLILP L + LG
Sbjct: 3 AFQKIKVANPIVEMDGDEMTRV---IWKSIKDKLILPFLELDIKYYDLG 48
>pir||S28423 isocitrate dehydrogenase (NADP) (EC 1.1.1.42) - alfalfa
Length = 412
Score = 146 bits (368), Expect = 7e-35
Identities = 71/76 (93%), Positives = 72/76 (94%)
Frame = +2
Query: 179 PVWELDIKYLDLGLPYRDETDDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKQMW 358
P ELDIKY DLGLPYRDET+DKVTVESAEATLKYNVAIKCATITPDEARVKEFGLK MW
Sbjct: 35 PFVELDIKYFDLGLPYRDETNDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKSMW 94
Query: 359 RSPNGTIRNILNGTVF 406
RSPNGTIRNILNGTVF
Sbjct: 95 RSPNGTIRNILNGTVF 110
Score = 40.4 bits (93), Expect = 0.005
Identities = 25/50 (50%), Positives = 28/50 (56%)
Frame = +1
Query: 67 MAFDKIKVANPIVENGREE*NSDFVGIWKSIKDKLILPCLGAGHQVLGLG 216
M F KIKVANPIVE +E IWK IKDKLI P + + LG
Sbjct: 1 MGFQKIKVANPIVEMDGDEMTRI---IWKYIKDKLIFPFVELDIKYFDLG 47
>sp|Q40345|IDHP_MEDSA ISOCITRATE DEHYDROGENASE [NADP], CHLOROPLAST PRECURSOR
(OXALOSUCCINATE DECARBOXYLASE) (IDH) (NADP+-SPECIFIC
ICDH) (IDP) gi|7488742|pir||T09619 isocitrate
dehydrogenase (NADP) (EC 1.1.1.42) precursor - alfalfa
(fragment) gi|166386|gb|AAA32656.1| isocitrate
dehydrogenase
Length = 433
Score = 146 bits (368), Expect = 7e-35
Identities = 71/76 (93%), Positives = 72/76 (94%)
Frame = +2
Query: 179 PVWELDIKYLDLGLPYRDETDDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKQMW 358
P ELDIKY DLGLPYRDET+DKVTVESAEATLKYNVAIKCATITPDEARVKEFGLK MW
Sbjct: 56 PFVELDIKYFDLGLPYRDETNDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKSMW 115
Query: 359 RSPNGTIRNILNGTVF 406
RSPNGTIRNILNGTVF
Sbjct: 116 RSPNGTIRNILNGTVF 131
Score = 43.1 bits (100), Expect = 8e-04
Identities = 29/68 (42%), Positives = 36/68 (52%)
Frame = +1
Query: 13 LTYPSFLPSFHRRSDSQTMAFDKIKVANPIVENGREE*NSDFVGIWKSIKDKLILPCLGA 192
L++ +F P + TM F KIKVANPIVE +E IWK IKDKLI P +
Sbjct: 6 LSFSAFFPII--TFTTATMGFQKIKVANPIVEMDGDEMTRI---IWKYIKDKLIFPFVEL 60
Query: 193 GHQVLGLG 216
+ LG
Sbjct: 61 DIKYFDLG 68
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 368,360,318
Number of Sequences: 1393205
Number of extensions: 7386076
Number of successful extensions: 21651
Number of sequences better than 10.0: 123
Number of HSP's better than 10.0 without gapping: 20787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21542
length of database: 448,689,247
effective HSP length: 111
effective length of database: 294,043,492
effective search space used: 7057043808
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
