Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005263A_C01 KMC005263A_c01
(575 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176647.1| methionine/cystathionine gamma lyase, putative;... 225 4e-58
gb|AAK39571.1|AC025296_6 putative gamma-lyase [Oryza sativa] 194 7e-49
pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomona... 78 9e-14
ref|NP_421962.1| methionine-gamma-lyase [Caulobacter crescentus ... 77 1e-13
emb|CAA04124.1| methionine gamma-lyase [Trichomonas vaginalis] 77 2e-13
>ref|NP_176647.1| methionine/cystathionine gamma lyase, putative; protein id:
At1g64660.1, supported by cDNA: gi_15450931, supported
by cDNA: gi_16226490 [Arabidopsis thaliana]
gi|25292080|pir||G96669 protein F1N19.23 [imported] -
Arabidopsis thaliana
gi|6633821|gb|AAF19680.1|AC009519_14 F1N19.23
[Arabidopsis thaliana] gi|15450932|gb|AAK96737.1|
similar to O-succinylhomoserine sulfhydrylase
[Arabidopsis thaliana]
gi|16226491|gb|AAL16181.1|AF428413_1 At1g64660/F1N19_22
[Arabidopsis thaliana]
Length = 441
Score = 225 bits (573), Expect = 4e-58
Identities = 111/157 (70%), Positives = 125/157 (78%)
Frame = +2
Query: 104 DAFALSAEKRRRADDADGDEISAKKQMQPFAPAAHGVFDPAASLASARHEFGEHGGVNMS 283
+ S +KR DD DGD + AKK A DPAA++A+ RHEFGEHGGVNMS
Sbjct: 9 EPLVFSGKKRNDRDDEDGDALVAKKSALAVCDA-----DPAAAIANIRHEFGEHGGVNMS 63
Query: 284 IEASATFTVMEPDTLRRMFAGELGPDRDFFIYSRHFNPTVLNLSRLMAALEGTEAAYCTS 463
IEASATFTVMEPDT+RRMF GELGPD DF++YSRHFNPTVLNLSR MAALEGT+AAYCTS
Sbjct: 64 IEASATFTVMEPDTMRRMFTGELGPDNDFYVYSRHFNPTVLNLSRQMAALEGTQAAYCTS 123
Query: 464 SGMSAISATLMQLCSHGDHVVASHTLYGGTHALLQHF 574
SGMSAIS+ ++QLCS G HVVA+ TLYGGTHALL HF
Sbjct: 124 SGMSAISSVMLQLCSSGGHVVAASTLYGGTHALLSHF 160
>gb|AAK39571.1|AC025296_6 putative gamma-lyase [Oryza sativa]
Length = 464
Score = 194 bits (493), Expect = 7e-49
Identities = 97/120 (80%), Positives = 106/120 (87%), Gaps = 1/120 (0%)
Frame = +2
Query: 218 DPAASLASARHEFGEHGGVNMSIEASATFTVMEPDTLRRMFAGELGPDR-DFFIYSRHFN 394
DPAA+LA+ARHEFGEHGGVNMSIEASATFTVMEPDT+RR+F+GELGP+R D +IYSRHFN
Sbjct: 45 DPAAALAAARHEFGEHGGVNMSIEASATFTVMEPDTMRRLFSGELGPERGDLYIYSRHFN 104
Query: 395 PTVLNLSRLMAALEGTEAAYCTSSGMSAISATLMQLCSHGDHVVASHTLYGGTHALLQHF 574
PTVL L R MAALEGTEAAYCT+SGMSAIS+ LMQL G HVVAS LYGGTHALL F
Sbjct: 105 PTVLALGRQMAALEGTEAAYCTASGMSAISSVLMQLVGAGGHVVASRCLYGGTHALLSRF 164
>pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In
Complex With Propargylglycine gi|15826192|pdb|1E5E|B
Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas
Vaginalis In Complex With Propargylglycine
gi|15826193|pdb|1E5F|A Chain A, Methionine Gamma-Lyase
(Mgl) From Trichomonas Vaginalis gi|15826194|pdb|1E5F|B
Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas
Vaginalis
Length = 404
Score = 77.8 bits (190), Expect = 9e-14
Identities = 47/123 (38%), Positives = 64/123 (51%)
Frame = +2
Query: 203 AHGVFDPAASLASARHEFGEHGGVNMSIEASATFTVMEPDTLRRMFAGELGPDRDFFIYS 382
AH PA + A + + G I ++TF FAG+ +IY+
Sbjct: 2 AHERMTPATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQ----ESGYIYT 57
Query: 383 RHFNPTVLNLSRLMAALEGTEAAYCTSSGMSAISATLMQLCSHGDHVVASHTLYGGTHAL 562
R NPTV NL +A LE TEA TSSGM AI+AT++ + GDH+++ LYG THAL
Sbjct: 58 RLGNPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHAL 117
Query: 563 LQH 571
+H
Sbjct: 118 FEH 120
>ref|NP_421962.1| methionine-gamma-lyase [Caulobacter crescentus CB15]
gi|25292076|pir||F87641 methionine-gamma-lyase
[imported] - Caulobacter crescentus
gi|13424838|gb|AAK25130.1| methionine-gamma-lyase
[Caulobacter crescentus CB15]
Length = 401
Score = 77.4 bits (189), Expect = 1e-13
Identities = 49/123 (39%), Positives = 62/123 (49%)
Frame = +2
Query: 200 AAHGVFDPAASLASARHEFGEHGGVNMSIEASATFTVMEPDTLRRMFAGELGPDRDFFIY 379
A H +DPA EHG + + ++TF + MFAG R+ Y
Sbjct: 12 AIHAGYDPA----------DEHGALTPPLHLTSTFAFESAEAGGEMFAGT----REGHFY 57
Query: 380 SRHFNPTVLNLSRLMAALEGTEAAYCTSSGMSAISATLMQLCSHGDHVVASHTLYGGTHA 559
SR NPT L R +A+LEG EAA T+SGM AI+ATL GD V+ TLYG T A
Sbjct: 58 SRISNPTTDLLERRLASLEGAEAAVATASGMGAITATLWSFLRAGDEVITDQTLYGCTFA 117
Query: 560 LLQ 568
L+
Sbjct: 118 FLR 120
>emb|CAA04124.1| methionine gamma-lyase [Trichomonas vaginalis]
Length = 396
Score = 76.6 bits (187), Expect = 2e-13
Identities = 46/123 (37%), Positives = 64/123 (51%)
Frame = +2
Query: 203 AHGVFDPAASLASARHEFGEHGGVNMSIEASATFTVMEPDTLRRMFAGELGPDRDFFIYS 382
+H PA + A + + G I ++TF FAG+ +IY+
Sbjct: 2 SHERMTPATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQ----ESGYIYT 57
Query: 383 RHFNPTVLNLSRLMAALEGTEAAYCTSSGMSAISATLMQLCSHGDHVVASHTLYGGTHAL 562
R NPTV NL +A LE TEA TSSGM AI+AT++ + GDH+++ LYG THAL
Sbjct: 58 RLGNPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHAL 117
Query: 563 LQH 571
+H
Sbjct: 118 FEH 120
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 549,109,638
Number of Sequences: 1393205
Number of extensions: 13476103
Number of successful extensions: 96616
Number of sequences better than 10.0: 1407
Number of HSP's better than 10.0 without gapping: 72510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92904
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
