Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005262A_C01 KMC005262A_c01
(607 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181009.1| hypothetical protein; protein id: At2g34620.1 [... 159 3e-38
gb|AAO41872.1| unknown protein [Arabidopsis thaliana] 159 3e-38
gb|AAO37134.1| hypothetical protein [Arabidopsis thaliana] 122 5e-27
ref|NP_178405.1| predicted by genefinder and genscan; protein id... 122 5e-27
gb|AAM61550.1| unknown [Arabidopsis thaliana] 114 1e-24
>ref|NP_181009.1| hypothetical protein; protein id: At2g34620.1 [Arabidopsis
thaliana] gi|25408339|pir||H84758 hypothetical protein
At2g34620 [imported] - Arabidopsis thaliana
gi|3128213|gb|AAC26693.1| hypothetical protein
[Arabidopsis thaliana]
Length = 303
Score = 159 bits (401), Expect = 3e-38
Identities = 74/111 (66%), Positives = 94/111 (84%)
Frame = -1
Query: 607 VLLVSNVERTVIPNLEYVENLGFSKGEARSLVLRCPALFTFSIENNFEPKFEYFAGEMGR 428
+LLVS+VE T+IP L ++E++GFS+ EA ++LRCPALFTFSIENNF+PK +YF E+
Sbjct: 184 ILLVSSVEHTLIPKLRFLESIGFSRPEAIGMILRCPALFTFSIENNFKPKLDYFMSEIKG 243
Query: 427 KLEELKEFPQYFAFSLENRIKPRHMEVVQCGINLPLSVMLKSTDEEFRELI 275
KLE LKEFPQYFAFSLE RIKPRH+E ++ G+ LPLS+MLKSTDEEF +L+
Sbjct: 244 KLENLKEFPQYFAFSLEKRIKPRHLESMERGLELPLSLMLKSTDEEFEQLL 294
>gb|AAO41872.1| unknown protein [Arabidopsis thaliana]
Length = 240
Score = 159 bits (401), Expect = 3e-38
Identities = 74/111 (66%), Positives = 94/111 (84%)
Frame = -1
Query: 607 VLLVSNVERTVIPNLEYVENLGFSKGEARSLVLRCPALFTFSIENNFEPKFEYFAGEMGR 428
+LLVS+VE T+IP L ++E++GFS+ EA ++LRCPALFTFSIENNF+PK +YF E+
Sbjct: 121 ILLVSSVEHTLIPKLRFLESIGFSRPEAIGMILRCPALFTFSIENNFKPKLDYFMSEIKG 180
Query: 427 KLEELKEFPQYFAFSLENRIKPRHMEVVQCGINLPLSVMLKSTDEEFRELI 275
KLE LKEFPQYFAFSLE RIKPRH+E ++ G+ LPLS+MLKSTDEEF +L+
Sbjct: 181 KLENLKEFPQYFAFSLEKRIKPRHLESMERGLELPLSLMLKSTDEEFEQLL 231
>gb|AAO37134.1| hypothetical protein [Arabidopsis thaliana]
Length = 283
Score = 122 bits (305), Expect = 5e-27
Identities = 61/108 (56%), Positives = 81/108 (74%), Gaps = 1/108 (0%)
Frame = -1
Query: 607 VLLVSNVERTVIPNLEYVEN-LGFSKGEARSLVLRCPALFTFSIENNFEPKFEYFAGEMG 431
VLLVSNVERT+IP +EY+E LGF++ E +V+R PAL T+S++NN PK E+F EM
Sbjct: 161 VLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPKVEFFIEEMR 220
Query: 430 RKLEELKEFPQYFAFSLENRIKPRHMEVVQCGINLPLSVMLKSTDEEF 287
++ELK FPQYF+FSLE +IKPRH + + GI +PLS MLK +D +F
Sbjct: 221 GDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSDGQF 268
>ref|NP_178405.1| predicted by genefinder and genscan; protein id: At2g03050.1
[Arabidopsis thaliana] gi|25410996|pir||G84443
hypothetical protein At2g03050 [imported] - Arabidopsis
thaliana gi|3461829|gb|AAC32923.1| predicted by
genefinder and genscan [Arabidopsis thaliana]
Length = 284
Score = 122 bits (305), Expect = 5e-27
Identities = 61/108 (56%), Positives = 81/108 (74%), Gaps = 1/108 (0%)
Frame = -1
Query: 607 VLLVSNVERTVIPNLEYVEN-LGFSKGEARSLVLRCPALFTFSIENNFEPKFEYFAGEMG 431
VLLVSNVERT+IP +EY+E LGF++ E +V+R PAL T+S++NN PK E+F EM
Sbjct: 162 VLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPKVEFFIEEMR 221
Query: 430 RKLEELKEFPQYFAFSLENRIKPRHMEVVQCGINLPLSVMLKSTDEEF 287
++ELK FPQYF+FSLE +IKPRH + + GI +PLS MLK +D +F
Sbjct: 222 GDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSDGQF 269
>gb|AAM61550.1| unknown [Arabidopsis thaliana]
Length = 320
Score = 114 bits (284), Expect = 1e-24
Identities = 53/111 (47%), Positives = 74/111 (65%)
Frame = -1
Query: 604 LLVSNVERTVIPNLEYVENLGFSKGEARSLVLRCPALFTFSIENNFEPKFEYFAGEMGRK 425
LL +V+ ++P ++Y E LGFS+ A ++ R P LF +SI N+EPK +Y EMGR
Sbjct: 204 LLSCSVDNKLVPRIDYFEKLGFSRRSATAMFKRFPQLFNYSIAENYEPKLKYLMVEMGRD 263
Query: 424 LEELKEFPQYFAFSLENRIKPRHMEVVQCGINLPLSVMLKSTDEEFRELIK 272
+ E+ EFPQYF+FSLENRIKPRH G+ PL VMLK+ + FR+ ++
Sbjct: 264 VREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPLPVMLKTNEAGFRDTLE 314
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 518,430,766
Number of Sequences: 1393205
Number of extensions: 11286148
Number of successful extensions: 28042
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 26953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27982
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
