Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005261A_C01 KMC005261A_c01
(586 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK69758.1|AF384822_1 CDPK adapter protein 1 [Mesembryanthemu... 55 8e-12
gb|AAF79739.1|AC005106_20 T25N20.6 [Arabidopsis thaliana] 49 2e-10
gb|AAM65388.1| unknown [Arabidopsis thaliana] 49 2e-10
ref|NP_563738.1| expressed protein; protein id: At1g05410.1, sup... 49 2e-10
gb|AAK71560.1|AC087852_20 unknown protein [Oryza sativa (japonic... 40 0.022
>gb|AAK69758.1|AF384822_1 CDPK adapter protein 1 [Mesembryanthemum crystallinum]
Length = 479
Score = 55.1 bits (131), Expect(3) = 8e-12
Identities = 26/57 (45%), Positives = 43/57 (74%)
Frame = -3
Query: 521 IEVDNDIGTISYDSLPKALTLEAEVDEVLQALRKSQELEYKVAEERIQAQKTYLQNL 351
++VD D +S+ + + L LE E+D+VL LR+SQE+EY++A+ER++AQK +L +L
Sbjct: 356 VQVDIDENNLSHQN--ECLKLEVEIDQVLHELRRSQEVEYRLAQERLRAQKDHLSSL 410
Score = 33.5 bits (75), Expect(3) = 8e-12
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = -2
Query: 276 RNQQIRKEVEKFEAMTKVANGFCQDAPKTILKEHFAL 166
+ + I+ E+ K + M KVA GF + PK ILKEHF L
Sbjct: 440 KEEYIQCELSKLKNMEKVAKGFGK-TPKEILKEHFNL 475
Score = 22.3 bits (46), Expect(3) = 8e-12
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -1
Query: 355 TLYQQLECEKSEL 317
+LYQQ++ EKSEL
Sbjct: 409 SLYQQMDKEKSEL 421
>gb|AAF79739.1|AC005106_20 T25N20.6 [Arabidopsis thaliana]
Length = 481
Score = 48.5 bits (114), Expect(3) = 2e-10
Identities = 27/63 (42%), Positives = 40/63 (62%), Gaps = 3/63 (4%)
Frame = -3
Query: 530 NDVIEVDND---IGTISYDSLPKALTLEAEVDEVLQALRKSQELEYKVAEERIQAQKTYL 360
ND ++ D IG I ++ + LE E+ EVL+ALRK+QE EY++AE ++ AQK L
Sbjct: 350 NDTLQSLQDVTPIGPIPFNHEAEMHKLEEEIGEVLRALRKAQEFEYQIAEGKLHAQKECL 409
Query: 359 QNL 351
+L
Sbjct: 410 SDL 412
Score = 34.7 bits (78), Expect(3) = 2e-10
Identities = 21/43 (48%), Positives = 30/43 (68%)
Frame = -2
Query: 294 TDVLEERNQQIRKEVEKFEAMTKVANGFCQDAPKTILKEHFAL 166
T+VL+ R QIRKEV K + M +VA GF + P+ +L+E+F L
Sbjct: 437 TNVLK-RLDQIRKEVTKLKEMEEVAKGFGR-TPRGVLEEYFHL 477
Score = 22.7 bits (47), Expect(3) = 2e-10
Identities = 10/13 (76%), Positives = 12/13 (91%)
Frame = -1
Query: 352 LYQQLECEKSELA 314
LY+QLE EKSEL+
Sbjct: 412 LYRQLEKEKSELS 424
>gb|AAM65388.1| unknown [Arabidopsis thaliana]
Length = 471
Score = 48.5 bits (114), Expect(3) = 2e-10
Identities = 27/63 (42%), Positives = 40/63 (62%), Gaps = 3/63 (4%)
Frame = -3
Query: 530 NDVIEVDND---IGTISYDSLPKALTLEAEVDEVLQALRKSQELEYKVAEERIQAQKTYL 360
ND ++ D IG I ++ + LE E+ EVL+ALRK+QE EY++AE ++ AQK L
Sbjct: 340 NDTLQSLQDVTPIGPIPFNHEAEMHKLEEEIGEVLRALRKAQEFEYQIAEGKLHAQKECL 399
Query: 359 QNL 351
+L
Sbjct: 400 SDL 402
Score = 34.7 bits (78), Expect(3) = 2e-10
Identities = 21/43 (48%), Positives = 30/43 (68%)
Frame = -2
Query: 294 TDVLEERNQQIRKEVEKFEAMTKVANGFCQDAPKTILKEHFAL 166
T+VL+ R QIRKEV K + M +VA GF + P+ +L+E+F L
Sbjct: 427 TNVLK-RLDQIRKEVTKLKEMEEVAKGFGR-TPRGVLEEYFHL 467
Score = 22.7 bits (47), Expect(3) = 2e-10
Identities = 10/13 (76%), Positives = 12/13 (91%)
Frame = -1
Query: 352 LYQQLECEKSELA 314
LY+QLE EKSEL+
Sbjct: 402 LYRQLEKEKSELS 414
>ref|NP_563738.1| expressed protein; protein id: At1g05410.1, supported by cDNA:
38810., supported by cDNA: gi_20465536 [Arabidopsis
thaliana] gi|18086400|gb|AAL57658.1| At1g05410/T25N20_5
[Arabidopsis thaliana] gi|18491167|gb|AAL69486.1|
unknown protein [Arabidopsis thaliana]
gi|20465537|gb|AAM20251.1| unknown protein [Arabidopsis
thaliana] gi|22655430|gb|AAM98307.1| At1g05410/T25N20_5
[Arabidopsis thaliana]
Length = 471
Score = 48.5 bits (114), Expect(3) = 2e-10
Identities = 27/63 (42%), Positives = 40/63 (62%), Gaps = 3/63 (4%)
Frame = -3
Query: 530 NDVIEVDND---IGTISYDSLPKALTLEAEVDEVLQALRKSQELEYKVAEERIQAQKTYL 360
ND ++ D IG I ++ + LE E+ EVL+ALRK+QE EY++AE ++ AQK L
Sbjct: 340 NDTLQSLQDVTPIGPIPFNHEAEMHKLEEEIGEVLRALRKAQEFEYQIAEGKLHAQKECL 399
Query: 359 QNL 351
+L
Sbjct: 400 SDL 402
Score = 34.7 bits (78), Expect(3) = 2e-10
Identities = 21/43 (48%), Positives = 30/43 (68%)
Frame = -2
Query: 294 TDVLEERNQQIRKEVEKFEAMTKVANGFCQDAPKTILKEHFAL 166
T+VL+ R QIRKEV K + M +VA GF + P+ +L+E+F L
Sbjct: 427 TNVLK-RLDQIRKEVTKLKEMEEVAKGFGR-TPRGVLEEYFHL 467
Score = 22.7 bits (47), Expect(3) = 2e-10
Identities = 10/13 (76%), Positives = 12/13 (91%)
Frame = -1
Query: 352 LYQQLECEKSELA 314
LY+QLE EKSEL+
Sbjct: 402 LYRQLEKEKSELS 414
>gb|AAK71560.1|AC087852_20 unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 378
Score = 40.0 bits (92), Expect = 0.022
Identities = 19/55 (34%), Positives = 35/55 (63%)
Frame = -3
Query: 515 VDNDIGTISYDSLPKALTLEAEVDEVLQALRKSQELEYKVAEERIQAQKTYLQNL 351
V+N I+ D ++ E +D L+ L++SQE EYK+AE+++ +QK ++ +L
Sbjct: 248 VENLPAYITEDQHTLSVRFEDSIDHALKELKRSQEAEYKLAEQKLYSQKDHVLSL 302
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 469,361,189
Number of Sequences: 1393205
Number of extensions: 9629004
Number of successful extensions: 28299
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 27286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28294
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
