Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005258A_C01 KMC005258A_c01
(436 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564617.1| expressed protein; protein id: At1g52910.1, sup... 46 1e-04
ref|NP_566516.1| expressed protein; protein id: At3g15480.1, sup... 45 2e-04
ref|NP_567774.1| Expressed protein; protein id: At4g27435.1, sup... 42 0.001
ref|NP_564769.1| Expressed protein; protein id: At1g61065.1, sup... 35 0.16
sp|Q26657|ALX_STRPU Aristaless homeobox protein (ALX) (SpPrx-1) ... 34 0.47
>ref|NP_564617.1| expressed protein; protein id: At1g52910.1, supported by cDNA:
21921. [Arabidopsis thaliana] gi|25405613|pir||D96570
unknown protein, 77186-78200 [imported] - Arabidopsis
thaliana gi|12324653|gb|AAG52289.1|AC019018_26 unknown
protein; 77186-78200 [Arabidopsis thaliana]
Length = 175
Score = 45.8 bits (107), Expect = 1e-04
Identities = 19/29 (65%), Positives = 25/29 (85%)
Frame = -1
Query: 436 AAGAAFVFFTAIISEFYYINYSSARESFQ 350
AAGA+F FTAI+S+FYYI+YS AR+ +Q
Sbjct: 143 AAGASFALFTAIVSQFYYISYSRARDGYQ 171
>ref|NP_566516.1| expressed protein; protein id: At3g15480.1, supported by cDNA:
22328., supported by cDNA: gi_15982922, supported by
cDNA: gi_19699225 [Arabidopsis thaliana]
gi|7021733|gb|AAF35414.1| unknown protein [Arabidopsis
thaliana] gi|15795113|dbj|BAB02377.1|
gb|AAF30339.1~gene_id:MJK13.14~similar to unknown
protein [Arabidopsis thaliana]
gi|15982923|gb|AAL09808.1| AT3g15480/MJK13_14
[Arabidopsis thaliana] gi|19699226|gb|AAL90979.1|
AT3g15480/MJK13_14 [Arabidopsis thaliana]
gi|21592323|gb|AAM64274.1| unknown [Arabidopsis
thaliana]
Length = 175
Score = 45.4 bits (106), Expect = 2e-04
Identities = 19/29 (65%), Positives = 25/29 (85%)
Frame = -1
Query: 436 AAGAAFVFFTAIISEFYYINYSSARESFQ 350
AAGAAF FTAI+S+FYY+ YS AR+++Q
Sbjct: 143 AAGAAFTLFTAIVSQFYYVCYSRARDAYQ 171
>ref|NP_567774.1| Expressed protein; protein id: At4g27435.1, supported by cDNA:
gi_15809977, supported by cDNA: gi_17981656 [Arabidopsis
thaliana] gi|15809978|gb|AAL06916.1| At4g27438
[Arabidopsis thaliana]
gi|17981657|gb|AAL51112.1|AF458340_1 At4g27438/At4g27438
[Arabidopsis thaliana]
Length = 173
Score = 42.4 bits (98), Expect = 0.001
Identities = 21/32 (65%), Positives = 24/32 (74%), Gaps = 1/32 (3%)
Frame = -1
Query: 436 AAGAAFVFFTAIISEFYYINYSSARE-SFQPY 344
AAGA+FVFF AI+S+FYY Y SA E S PY
Sbjct: 142 AAGASFVFFNAIVSQFYYFFYFSAAEASLSPY 173
>ref|NP_564769.1| Expressed protein; protein id: At1g61065.1, supported by cDNA:
25888., supported by cDNA: gi_16930460, supported by
cDNA: gi_19310518 [Arabidopsis thaliana]
gi|16930461|gb|AAL31916.1|AF419584_1 unknown protein
[Arabidopsis thaliana] gi|19310519|gb|AAL84993.1|
At1g61067/At1g61067 [Arabidopsis thaliana]
Length = 180
Score = 35.4 bits (80), Expect = 0.16
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = -1
Query: 433 AGAAFVFFTAIISEFYYINYSSARESFQP 347
AGAAF+ T I+SE YY+ S A++ FQP
Sbjct: 142 AGAAFIVLTGIVSELYYVTLSRAKD-FQP 169
>sp|Q26657|ALX_STRPU Aristaless homeobox protein (ALX) (SpPrx-1)
gi|2055317|dbj|BAA19774.1| homeobox [Strongylocentrotus
purpuratus]
Length = 327
Score = 33.9 bits (76), Expect = 0.47
Identities = 19/67 (28%), Positives = 31/67 (45%), Gaps = 2/67 (2%)
Frame = +1
Query: 169 VNTRYSTESREWKKRSVLQNPESIYSH--FSGSSKGGLAVKFLTDNLMCRLPCRHRSHHQ 342
V + +W+KR L ++ H F G ++ L + +CRL C R+H Q
Sbjct: 256 VQVWFQNRRAKWRKREKLGLQPRLHPHPHFGPILGGPISDSNLVSSHLCRLACIDRAHRQ 315
Query: 343 GMVGSFP 363
G++ S P
Sbjct: 316 GLLTSPP 322
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 376,836,212
Number of Sequences: 1393205
Number of extensions: 7989128
Number of successful extensions: 19986
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 19558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19983
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 6756111528
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
