Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005255A_C01 KMC005255A_c01
(587 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195749.1| mRNA capping enzyme - like protein; protein id:... 75 5e-13
gb|AAN17417.1| mRNA capping enzyme - like protein [Arabidopsis t... 75 5e-13
ref|NP_198173.1| mRNA capping enzyme - like; protein id: At5g282... 54 2e-06
ref|NP_738943.1| putative transport protein [Corynebacterium eff... 37 0.18
ref|NP_702032.1| mRNA capping enzyme, putative [Plasmodium falci... 37 0.24
>ref|NP_195749.1| mRNA capping enzyme - like protein; protein id: At5g01290.1
[Arabidopsis thaliana] gi|11358515|pir||T45969 mRNA
capping enzyme-like protein - Arabidopsis thaliana
gi|6759452|emb|CAB69857.1| mRNA capping enzyme-like
protein [Arabidopsis thaliana]
Length = 607
Score = 75.5 bits (184), Expect = 5e-13
Identities = 37/50 (74%), Positives = 43/50 (86%)
Frame = -2
Query: 586 DKSTPNEFNTYKKVMRSIRDNITEEDLLNEIDEIIRLPMYADRIRMDSKA 437
DK+TPN+ NT +KV++SI DNITEE LL EI EIIRLPMYADRIR DS+A
Sbjct: 554 DKTTPNDINTARKVIKSINDNITEEVLLQEIREIIRLPMYADRIRNDSQA 603
>gb|AAN17417.1| mRNA capping enzyme - like protein [Arabidopsis thaliana]
gi|24899669|gb|AAN65049.1| mRNA capping enzyme - like
protein [Arabidopsis thaliana]
Length = 657
Score = 75.5 bits (184), Expect = 5e-13
Identities = 37/50 (74%), Positives = 43/50 (86%)
Frame = -2
Query: 586 DKSTPNEFNTYKKVMRSIRDNITEEDLLNEIDEIIRLPMYADRIRMDSKA 437
DK+TPN+ NT +KV++SI DNITEE LL EI EIIRLPMYADRIR DS+A
Sbjct: 604 DKTTPNDINTARKVIKSINDNITEEVLLQEIREIIRLPMYADRIRNDSQA 653
>ref|NP_198173.1| mRNA capping enzyme - like; protein id: At5g28210.1 [Arabidopsis
thaliana] gi|5732432|gb|AAD49100.1|AF177535_4 contains
similarity to Pfam family PF01331 - mRNA capping enzyme;
score=24.3, E=1.3e-11, E=1 [Arabidopsis thaliana]
Length = 625
Score = 53.5 bits (127), Expect = 2e-06
Identities = 26/49 (53%), Positives = 34/49 (69%)
Frame = -2
Query: 586 DKSTPNEFNTYKKVMRSIRDNITEEDLLNEIDEIIRLPMYADRIRMDSK 440
DKS PN T + V++ I D++T+E LL EI EII LPMY +RI D+K
Sbjct: 565 DKSKPNGIGTGRSVIKCIEDDLTKEVLLKEIKEIILLPMYVERIENDTK 613
>ref|NP_738943.1| putative transport protein [Corynebacterium efficiens YS-314]
gi|23494176|dbj|BAC19143.1| putative transport protein
[Corynebacterium efficiens YS-314]
Length = 313
Score = 37.0 bits (84), Expect = 0.18
Identities = 25/88 (28%), Positives = 46/88 (51%)
Frame = +3
Query: 321 LRARHHWIHWISFSLVSISSYLTTTTNHGLGLAALACGVALLSILIRSAYIGSRIISSIS 500
+RAR W+ F V ++ L T T G+ L G + + A IG+ +++++
Sbjct: 212 VRARGASEMWVFFRNVLRNALLPTLTMAGILFGELVGGAVVTETVFGRAGIGAMTVNAVA 271
Query: 501 FNKSSSVMLSLMLRITFLYVLNSFGVDL 584
N+ + VML++++ +YVL + VDL
Sbjct: 272 -NRDTPVMLAIVVIAAAIYVLINLIVDL 298
>ref|NP_702032.1| mRNA capping enzyme, putative [Plasmodium falciparum 3D7]
gi|23497209|gb|AAN36756.1|AE014818_21 mRNA capping
enzyme, putative [Plasmodium falciparum 3D7]
Length = 520
Score = 36.6 bits (83), Expect = 0.24
Identities = 16/31 (51%), Positives = 23/31 (73%)
Frame = -2
Query: 586 DKSTPNEFNTYKKVMRSIRDNITEEDLLNEI 494
DK+ PN+ +T KV++SI DNIT + L+ EI
Sbjct: 483 DKNIPNDISTLNKVIQSILDNITIDSLIKEI 513
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,528,585
Number of Sequences: 1393205
Number of extensions: 11268078
Number of successful extensions: 23771
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 23135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23756
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
