Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005253A_C01 KMC005253A_c01
(640 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S15348 RNA-binding protein, 28K - spinach 158 5e-38
sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplast (28RNP) 158 5e-38
emb|CAA41023.1| 28kD RNA binding protein [Spinacia oleracea] 158 5e-38
sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplast precu... 156 3e-37
pir||S53492 RNA-binding protein cp31 precursor - Arabidopsis tha... 155 4e-37
>pir||S15348 RNA-binding protein, 28K - spinach
Length = 233
Score = 158 bits (400), Expect = 5e-38
Identities = 78/98 (79%), Positives = 88/98 (89%)
Frame = -1
Query: 640 PERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFV 461
PERAPR D +P+ RVYVGNLPWD D S+LEQ+FSEHGKVVSARVV DRETGRSRGFGFV
Sbjct: 137 PERAPRG-DFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFV 195
Query: 460 TMSDEAELNDAIAALDGQSLGGRTIRVNVAEDRPRRSF 347
TMS E+E+NDAIAALDGQ+L GR +RVNVAE+RPRR+F
Sbjct: 196 TMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPRRAF 233
Score = 77.4 bits (189), Expect = 1e-13
Identities = 38/79 (48%), Positives = 51/79 (64%)
Frame = -1
Query: 598 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 419
+++VGNLP+D D+ +L +F G V A V+Y+RET RSRGFGFVTMS E A+
Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 115
Query: 418 LDGQSLGGRTIRVNVAEDR 362
L+G + GR + VN A R
Sbjct: 116 LNGYDMDGRQLTVNKAAPR 134
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplast (28RNP)
Length = 233
Score = 158 bits (400), Expect = 5e-38
Identities = 78/98 (79%), Positives = 88/98 (89%)
Frame = -1
Query: 640 PERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFV 461
PERAPR D +P+ RVYVGNLPWD D S+LEQ+FSEHGKVVSARVV DRETGRSRGFGFV
Sbjct: 137 PERAPRG-DFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFV 195
Query: 460 TMSDEAELNDAIAALDGQSLGGRTIRVNVAEDRPRRSF 347
TMS E+E+NDAIAALDGQ+L GR +RVNVAE+RPRR+F
Sbjct: 196 TMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPRRAF 233
Score = 77.4 bits (189), Expect = 1e-13
Identities = 38/79 (48%), Positives = 51/79 (64%)
Frame = -1
Query: 598 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 419
+++VGNLP+D D+ +L +F G V A V+Y+RET RSRGFGFVTMS E A+
Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 115
Query: 418 LDGQSLGGRTIRVNVAEDR 362
L+G + GR + VN A R
Sbjct: 116 LNGYDMDGRQLTVNKAAPR 134
>emb|CAA41023.1| 28kD RNA binding protein [Spinacia oleracea]
Length = 226
Score = 158 bits (400), Expect = 5e-38
Identities = 78/98 (79%), Positives = 88/98 (89%)
Frame = -1
Query: 640 PERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFV 461
PERAPR D +P+ RVYVGNLPWD D S+LEQ+FSEHGKVVSARVV DRETGRSRGFGFV
Sbjct: 130 PERAPRG-DFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFV 188
Query: 460 TMSDEAELNDAIAALDGQSLGGRTIRVNVAEDRPRRSF 347
TMS E+E+NDAIAALDGQ+L GR +RVNVAE+RPRR+F
Sbjct: 189 TMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPRRAF 226
Score = 77.4 bits (189), Expect = 1e-13
Identities = 38/79 (48%), Positives = 51/79 (64%)
Frame = -1
Query: 598 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 419
+++VGNLP+D D+ +L +F G V A V+Y+RET RSRGFGFVTMS E A+
Sbjct: 49 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 108
Query: 418 LDGQSLGGRTIRVNVAEDR 362
L+G + GR + VN A R
Sbjct: 109 LNGYDMDGRQLTVNKAAPR 127
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)
gi|100388|pir||S12109 ribonucleoprotein, 28K, precursor
- common tobacco gi|19750|emb|CAA37880.1| 28 kDa
ribonucleoprotein precursor [Nicotiana sylvestris]
Length = 276
Score = 156 bits (394), Expect = 3e-37
Identities = 74/97 (76%), Positives = 89/97 (91%)
Frame = -1
Query: 640 PERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFV 461
PERAPR+F QP +R+YVGN+PWD D+++LEQVFSEHGKVVSARVV+DRE+GRSRGFGFV
Sbjct: 180 PERAPRTF--QPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFV 237
Query: 460 TMSDEAELNDAIAALDGQSLGGRTIRVNVAEDRPRRS 350
TMS EAE+++AIA LDGQ+L GRTIRVN AE+RPRR+
Sbjct: 238 TMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPRRN 274
Score = 76.6 bits (187), Expect = 3e-13
Identities = 39/82 (47%), Positives = 51/82 (61%)
Frame = -1
Query: 598 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 419
+++VGNLP+D D+ L Q+F + G V A V+Y+RET RSRGFGFVTMS E + A+
Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVEL 157
Query: 418 LDGQSLGGRTIRVNVAEDRPRR 353
L GR + VN A R R
Sbjct: 158 YSQYDLNGRLLTVNKAAPRGSR 179
>pir||S53492 RNA-binding protein cp31 precursor - Arabidopsis thaliana
gi|681906|dbj|BAA06520.1| cp31 [Arabidopsis thaliana]
Length = 314
Score = 155 bits (392), Expect = 4e-37
Identities = 77/96 (80%), Positives = 85/96 (88%)
Frame = -1
Query: 640 PERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFV 461
PERAPR ++ PAFRVYVGNLPWD DN +LEQ+FSEHGKVV ARVVYDRETGRSRGFGFV
Sbjct: 218 PERAPRVYE--PAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFV 275
Query: 460 TMSDEAELNDAIAALDGQSLGGRTIRVNVAEDRPRR 353
TMSD ELN+AI+ALDGQ+L GR IRVNVAE+RP R
Sbjct: 276 TMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPR 311
Score = 68.9 bits (167), Expect = 5e-11
Identities = 35/82 (42%), Positives = 49/82 (59%)
Frame = -1
Query: 598 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 419
+++VGNL +D ++ L +F + G V A V+Y+RET +SRGFGFVTMS E A+
Sbjct: 136 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 195
Query: 418 LDGQSLGGRTIRVNVAEDRPRR 353
+ L GR + VN A R R
Sbjct: 196 FNRYDLNGRLLTVNKAAPRGSR 217
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 541,095,801
Number of Sequences: 1393205
Number of extensions: 11722199
Number of successful extensions: 32630
Number of sequences better than 10.0: 2441
Number of HSP's better than 10.0 without gapping: 29879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32172
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
