Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005252A_C01 KMC005252A_c01
(770 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177020.1| very-long-chain fatty acid condensing enzyme (C... 231 9e-60
gb|AAL50069.1| At1g68530/T26J14_10 [Arabidopsis thaliana] gi|203... 231 9e-60
gb|AAM65060.1| very-long-chain fatty acid condensing enzyme CUT1... 231 9e-60
ref|NP_173916.1| fatty acid condensing enzyme CUT1, putative; pr... 226 4e-58
gb|AAO42223.1| putative fatty acid condensing enzyme CUT1 [Arabi... 226 4e-58
>ref|NP_177020.1| very-long-chain fatty acid condensing enzyme (CUT1); protein id:
At1g68530.1, supported by cDNA: 36276. [Arabidopsis
thaliana] gi|25456824|pir||T52308 very-long-chain fatty
acid condensing enzyme CUT1 [validated] - Arabidopsis
thaliana gi|5001734|gb|AAD37122.1|AF129511_1
very-long-chain fatty acid condensing enzyme CUT1
[Arabidopsis thaliana]
gi|12324880|gb|AAG52390.1|AC011915_4 very-long-chain
fatty acid condensing enzyme (CUT1); 56079-54227
[Arabidopsis thaliana]
Length = 497
Score = 231 bits (589), Expect = 9e-60
Identities = 107/115 (93%), Positives = 111/115 (96%)
Frame = -1
Query: 770 KQAFEHFCIHAGGRAVIDELQRNLQLSAEHVEASRMTLHRFGNTSSSSLWYELNYIESKG 591
K AFEHFCIHAGGRAVIDELQ+NLQLS EHVEASRMTLHRFGNTSSSSLWYEL+YIESKG
Sbjct: 383 KLAFEHFCIHAGGRAVIDELQKNLQLSGEHVEASRMTLHRFGNTSSSSLWYELSYIESKG 442
Query: 590 RMKRGDRVWQIAFGSGFKCNSAVWKCNRTIKTPFDGPWSDCIDRYPVHIPEIVKL 426
RM+RGDRVWQIAFGSGFKCNSAVWKCNRTIKTP DGPWSDCIDRYPV IPE+VKL
Sbjct: 443 RMRRGDRVWQIAFGSGFKCNSAVWKCNRTIKTPKDGPWSDCIDRYPVFIPEVVKL 497
>gb|AAL50069.1| At1g68530/T26J14_10 [Arabidopsis thaliana]
gi|20334738|gb|AAM16230.1| At1g68530/T26J14_10
[Arabidopsis thaliana]
Length = 497
Score = 231 bits (589), Expect = 9e-60
Identities = 107/115 (93%), Positives = 111/115 (96%)
Frame = -1
Query: 770 KQAFEHFCIHAGGRAVIDELQRNLQLSAEHVEASRMTLHRFGNTSSSSLWYELNYIESKG 591
K AFEHFCIHAGGRAVIDELQ+NLQLS EHVEASRMTLHRFGNTSSSSLWYEL+YIESKG
Sbjct: 383 KLAFEHFCIHAGGRAVIDELQKNLQLSGEHVEASRMTLHRFGNTSSSSLWYELSYIESKG 442
Query: 590 RMKRGDRVWQIAFGSGFKCNSAVWKCNRTIKTPFDGPWSDCIDRYPVHIPEIVKL 426
RM+RGDRVWQIAFGSGFKCNSAVWKCNRTIKTP DGPWSDCIDRYPV IPE+VKL
Sbjct: 443 RMRRGDRVWQIAFGSGFKCNSAVWKCNRTIKTPKDGPWSDCIDRYPVFIPEVVKL 497
>gb|AAM65060.1| very-long-chain fatty acid condensing enzyme CUT1 [Arabidopsis
thaliana]
Length = 492
Score = 231 bits (589), Expect = 9e-60
Identities = 107/115 (93%), Positives = 111/115 (96%)
Frame = -1
Query: 770 KQAFEHFCIHAGGRAVIDELQRNLQLSAEHVEASRMTLHRFGNTSSSSLWYELNYIESKG 591
K AFEHFCIHAGGRAVIDELQ+NLQLS EHVEASRMTLHRFGNTSSSSLWYEL+YIESKG
Sbjct: 378 KLAFEHFCIHAGGRAVIDELQKNLQLSGEHVEASRMTLHRFGNTSSSSLWYELSYIESKG 437
Query: 590 RMKRGDRVWQIAFGSGFKCNSAVWKCNRTIKTPFDGPWSDCIDRYPVHIPEIVKL 426
RM+RGDRVWQIAFGSGFKCNSAVWKCNRTIKTP DGPWSDCIDRYPV IPE+VKL
Sbjct: 438 RMRRGDRVWQIAFGSGFKCNSAVWKCNRTIKTPKDGPWSDCIDRYPVFIPEVVKL 492
>ref|NP_173916.1| fatty acid condensing enzyme CUT1, putative; protein id:
At1g25450.1, supported by cDNA: 99793. [Arabidopsis
thaliana] gi|25403020|pir||F86384 probable protein fatty
acid condensing enzyme CUT1 [imported] - Arabidopsis
thaliana gi|12321497|gb|AAG50800.1|AC079281_2 fatty acid
condensing enzyme CUT1, putative [Arabidopsis thaliana]
Length = 492
Score = 226 bits (575), Expect = 4e-58
Identities = 104/115 (90%), Positives = 110/115 (95%)
Frame = -1
Query: 770 KQAFEHFCIHAGGRAVIDELQRNLQLSAEHVEASRMTLHRFGNTSSSSLWYELNYIESKG 591
KQAFEHFCIHAGGRAVIDELQ+NLQLS EHVEASRMTLHRFGNTSSSSLWYEL+YIE++G
Sbjct: 378 KQAFEHFCIHAGGRAVIDELQKNLQLSGEHVEASRMTLHRFGNTSSSSLWYELSYIEAQG 437
Query: 590 RMKRGDRVWQIAFGSGFKCNSAVWKCNRTIKTPFDGPWSDCIDRYPVHIPEIVKL 426
RMKR DRVWQIAFGSGFKCNSAVWKCNRTIKTP DG WSDCI+RYPV IPE+VKL
Sbjct: 438 RMKRNDRVWQIAFGSGFKCNSAVWKCNRTIKTPTDGAWSDCIERYPVFIPEVVKL 492
>gb|AAO42223.1| putative fatty acid condensing enzyme CUT1 [Arabidopsis thaliana]
Length = 492
Score = 226 bits (575), Expect = 4e-58
Identities = 104/115 (90%), Positives = 110/115 (95%)
Frame = -1
Query: 770 KQAFEHFCIHAGGRAVIDELQRNLQLSAEHVEASRMTLHRFGNTSSSSLWYELNYIESKG 591
KQAFEHFCIHAGGRAVIDELQ+NLQLS EHVEASRMTLHRFGNTSSSSLWYEL+YIE++G
Sbjct: 378 KQAFEHFCIHAGGRAVIDELQKNLQLSGEHVEASRMTLHRFGNTSSSSLWYELSYIEAQG 437
Query: 590 RMKRGDRVWQIAFGSGFKCNSAVWKCNRTIKTPFDGPWSDCIDRYPVHIPEIVKL 426
RMKR DRVWQIAFGSGFKCNSAVWKCNRTIKTP DG WSDCI+RYPV IPE+VKL
Sbjct: 438 RMKRNDRVWQIAFGSGFKCNSAVWKCNRTIKTPTDGAWSDCIERYPVFIPEVVKL 492
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 630,158,308
Number of Sequences: 1393205
Number of extensions: 13862849
Number of successful extensions: 42930
Number of sequences better than 10.0: 611
Number of HSP's better than 10.0 without gapping: 38675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42163
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 37815044670
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
