Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005251A_C01 KMC005251A_c01
(483 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565692.1| expressed protein; protein id: At2g30010.1, sup... 112 6e-33
ref|NP_200668.1| putative protein; protein id: At5g58600.1, supp... 101 5e-21
gb|AAM62736.1| unknown [Arabidopsis thaliana] 99 2e-20
ref|NP_199745.1| putative protein; protein id: At5g49340.1 [Arab... 86 5e-20
ref|NP_565779.1| expressed protein; protein id: At2g34070.1, sup... 85 2e-19
>ref|NP_565692.1| expressed protein; protein id: At2g30010.1, supported by cDNA:
38891., supported by cDNA: gi_16226758 [Arabidopsis
thaliana] gi|7486044|pir||T02484 hypothetical protein
At2g30010 [imported] - Arabidopsis thaliana
gi|3420050|gb|AAC31851.1| expressed protein [Arabidopsis
thaliana] gi|16226759|gb|AAL16254.1|AF428324_1
At2g30010/F23F1.7 [Arabidopsis thaliana]
Length = 398
Score = 112 bits (279), Expect(2) = 6e-33
Identities = 51/79 (64%), Positives = 62/79 (77%), Gaps = 1/79 (1%)
Frame = -3
Query: 349 FPEQMKVVDIVIREMRNPAYLMDITMLSALRKDAHPSVYSGDLSPAPRANPD-YSDCSPW 173
+ Q KV+D V++EM++ LMDITMLSALR D HPS+YSGDL+P+ + NPD SDCS W
Sbjct: 320 YVNQKKVIDDVVKEMKSHVSLMDITMLSALRVDGHPSIYSGDLNPSLKRNPDRSSDCSHW 379
Query: 172 CLPGLPDAWNELFYTALFY 116
CLPGLPD WN+LFY AL Y
Sbjct: 380 CLPGLPDTWNQLFYAALLY 398
Score = 50.1 bits (118), Expect(2) = 6e-33
Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
Frame = -2
Query: 482 FFLGISPSHTHPNEWSSGVTTVT----SKNCYGETAPISSSGTAYP 357
FFL +SP+H +PNEW+S T T K+CYG+T P SGT YP
Sbjct: 273 FFLSVSPTHYNPNEWTSRSKTSTITQGGKSCYGQTTPF--SGTTYP 316
>ref|NP_200668.1| putative protein; protein id: At5g58600.1, supported by cDNA:
155128. [Arabidopsis thaliana]
gi|8843782|dbj|BAA97330.1|
gene_id:MZN1.6~pir||T02484~strong similarity to unknown
protein [Arabidopsis thaliana]
gi|26449857|dbj|BAC42051.1| unknown protein [Arabidopsis
thaliana] gi|28827570|gb|AAO50629.1| unknown protein
[Arabidopsis thaliana]
Length = 402
Score = 101 bits (251), Expect = 5e-21
Identities = 48/91 (52%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Frame = -3
Query: 385 PSVAVAQRIPGVFPEQMKVVDIVIREMRNPAYLMDITMLSALRKDAHPSVYSGDLSPAPR 206
P A + + V+ V+ M NPA+L+DIT+LS+LRKD HPSVYSG +S + R
Sbjct: 312 PITGTAYPVSSYTDQLRSVIVEVLHGMHNPAFLLDITLLSSLRKDGHPSVYSGLISGSQR 371
Query: 205 ANPDYS-DCSPWCLPGLPDAWNELFYTALFY 116
+ PD S DCS WCLPGLPD WN+L YT L Y
Sbjct: 372 SRPDQSADCSHWCLPGLPDTWNQLLYTLLIY 402
Score = 49.7 bits (117), Expect = 2e-05
Identities = 23/41 (56%), Positives = 32/41 (77%)
Frame = -2
Query: 479 FLGISPSHTHPNEWSSGVTTVTSKNCYGETAPISSSGTAYP 357
FL ISP+H +P++W++ ++ SKNCYGET PI +GTAYP
Sbjct: 282 FLSISPTHDNPSDWAASSSS-GSKNCYGETEPI--TGTAYP 319
>gb|AAM62736.1| unknown [Arabidopsis thaliana]
Length = 402
Score = 99.0 bits (245), Expect = 2e-20
Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Frame = -3
Query: 385 PSVAVAQRIPGVFPEQMKVVDIVIREMRNPAYLMDITMLSALRKDAHPSVYSGDLSPAPR 206
P A + + V+ V+ M PA+L+DIT+LS+LRKD HPSVYSG +S + R
Sbjct: 312 PITGTAYPVSSYTDQLRSVIVEVLHGMHKPAFLLDITLLSSLRKDGHPSVYSGLISGSQR 371
Query: 205 ANPDYS-DCSPWCLPGLPDAWNELFYTALFY 116
+ PD S DCS WCLPGLPD WN+L YT L Y
Sbjct: 372 SRPDQSADCSHWCLPGLPDTWNQLLYTLLIY 402
Score = 49.7 bits (117), Expect = 2e-05
Identities = 23/41 (56%), Positives = 32/41 (77%)
Frame = -2
Query: 479 FLGISPSHTHPNEWSSGVTTVTSKNCYGETAPISSSGTAYP 357
FL ISP+H +P++W++ ++ SKNCYGET PI +GTAYP
Sbjct: 282 FLSISPTHDNPSDWAASSSS-GSKNCYGETEPI--TGTAYP 319
>ref|NP_199745.1| putative protein; protein id: At5g49340.1 [Arabidopsis thaliana]
Length = 457
Score = 85.9 bits (211), Expect(2) = 5e-20
Identities = 41/81 (50%), Positives = 52/81 (63%), Gaps = 3/81 (3%)
Frame = -3
Query: 355 GVFPEQMKVVDIVIREMRNPAYLMDITMLSALRKDAHPSVYSGDLSP---APRANPDYSD 185
GV+P MKVV+ VI EM+ P + M+IT ++ R D HPSVY P +P A Y D
Sbjct: 362 GVYPWMMKVVESVISEMKTPVFYMNITKMTWYRTDGHPSVYRQPADPRGTSPAAGM-YQD 420
Query: 184 CSPWCLPGLPDAWNELFYTAL 122
CS WCLPG+PD+WN+L Y L
Sbjct: 421 CSHWCLPGVPDSWNQLLYATL 441
Score = 32.7 bits (73), Expect(2) = 5e-20
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -2
Query: 482 FFLGISPSHTHPNEWSSGVTTVTSKNCYGETAPISSS--GTAYPW 354
FF+G S SH W+SG C GET PI + YPW
Sbjct: 328 FFVGYSSSHFRKGAWNSG------GQCDGETRPIQNETYTGVYPW 366
>ref|NP_565779.1| expressed protein; protein id: At2g34070.1, supported by cDNA:
25519. [Arabidopsis thaliana] gi|20196907|gb|AAB67625.2|
expressed protein [Arabidopsis thaliana]
gi|21554400|gb|AAM63505.1| unknown [Arabidopsis
thaliana]
Length = 385
Score = 85.1 bits (209), Expect(2) = 2e-19
Identities = 42/79 (53%), Positives = 47/79 (59%)
Frame = -3
Query: 358 PGVFPEQMKVVDIVIREMRNPAYLMDITMLSALRKDAHPSVYSGDLSPAPRANPDYSDCS 179
PG +V V+ MR P YL+DIT LS LRKDAHPS Y GD +DCS
Sbjct: 314 PGGSLPAASIVSRVLSTMRTPVYLLDITTLSQLRKDAHPSTYGGD---------GGTDCS 364
Query: 178 PWCLPGLPDAWNELFYTAL 122
WCLPGLPD WN+L Y AL
Sbjct: 365 HWCLPGLPDTWNQLLYAAL 383
Score = 31.2 bits (69), Expect(2) = 2e-19
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 482 FFLGISPSHTHPNEWSSGVTTVTSKNCYGETAPISSSGTAYP 357
FF GISP+H EW+ K C G+ P+ +G+ YP
Sbjct: 280 FFQGISPTHYMGREWNE-----PRKTCNGQMQPL--TGSTYP 314
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 424,924,975
Number of Sequences: 1393205
Number of extensions: 8754667
Number of successful extensions: 21224
Number of sequences better than 10.0: 113
Number of HSP's better than 10.0 without gapping: 20643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21126
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
