Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005250A_C02 KMC005250A_c02
(678 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568077.1| putative protein; protein id: At4g39970.1, supp... 209 3e-53
gb|AAM65187.1| unknown [Arabidopsis thaliana] 207 8e-53
gb|AAM83233.1| AT4g39970/T5J17_140 [Arabidopsis thaliana] gi|235... 207 8e-53
gb|AAM63700.1| unknown [Arabidopsis thaliana] 95 8e-19
ref|NP_566903.1| Expressed protein; protein id: At3g48420.1, sup... 95 8e-19
>ref|NP_568077.1| putative protein; protein id: At4g39970.1, supported by cDNA:
37341. [Arabidopsis thaliana]
Length = 316
Score = 209 bits (532), Expect = 3e-53
Identities = 102/124 (82%), Positives = 117/124 (94%)
Frame = -1
Query: 678 KKLAVCSAATKSSVILCLENLIGIERFQSLDCFLAGDDVKEKKPDPSIYLTASKKLGVSE 499
KKLAVCSAATKSSVILCLENLI IERFQ LDCFLAGDDVKEKKPDPSIY+TA++KLGVS
Sbjct: 192 KKLAVCSAATKSSVILCLENLIDIERFQGLDCFLAGDDVKEKKPDPSIYITAAEKLGVSV 251
Query: 498 KDCLVIEDSVIGLQAATQAGMSCVVTYTSSTAEQDFKEAIAIYPDLSNLRLNDLELLLKD 319
KDCLV+EDSVIGLQAAT+AGMSCV+TYTSST++Q+F +AIA+YPDLSN++L DLE LL+
Sbjct: 252 KDCLVVEDSVIGLQAATKAGMSCVITYTSSTSDQNFNDAIAVYPDLSNVKLKDLETLLQT 311
Query: 318 VVTA 307
+VTA
Sbjct: 312 IVTA 315
>gb|AAM65187.1| unknown [Arabidopsis thaliana]
Length = 316
Score = 207 bits (528), Expect = 8e-53
Identities = 101/124 (81%), Positives = 116/124 (93%)
Frame = -1
Query: 678 KKLAVCSAATKSSVILCLENLIGIERFQSLDCFLAGDDVKEKKPDPSIYLTASKKLGVSE 499
KKLAVCSAATKSSVILCLENL+ IERFQ LDCFLAGDDVKEKKPDPSIY+TA++KLGVS
Sbjct: 192 KKLAVCSAATKSSVILCLENLLDIERFQGLDCFLAGDDVKEKKPDPSIYITAAEKLGVSV 251
Query: 498 KDCLVIEDSVIGLQAATQAGMSCVVTYTSSTAEQDFKEAIAIYPDLSNLRLNDLELLLKD 319
KDCLV+ DSVIGLQAAT+AGMSCV+TYTSST++QDF +AIA+YPDLSN++L DLE LL+
Sbjct: 252 KDCLVVGDSVIGLQAATKAGMSCVITYTSSTSDQDFNDAIAVYPDLSNVKLTDLETLLQT 311
Query: 318 VVTA 307
+VTA
Sbjct: 312 IVTA 315
>gb|AAM83233.1| AT4g39970/T5J17_140 [Arabidopsis thaliana]
gi|23505871|gb|AAN28795.1| At4g39970/T5J17_140
[Arabidopsis thaliana]
Length = 316
Score = 207 bits (528), Expect = 8e-53
Identities = 101/124 (81%), Positives = 117/124 (93%)
Frame = -1
Query: 678 KKLAVCSAATKSSVILCLENLIGIERFQSLDCFLAGDDVKEKKPDPSIYLTASKKLGVSE 499
KKLAVCSAATKSSVILCLENLI IERFQ LDCFLAGDDVKEKKPDPSIY+TA++KLGVS
Sbjct: 192 KKLAVCSAATKSSVILCLENLIDIERFQGLDCFLAGDDVKEKKPDPSIYITAAEKLGVSV 251
Query: 498 KDCLVIEDSVIGLQAATQAGMSCVVTYTSSTAEQDFKEAIAIYPDLSNLRLNDLELLLKD 319
KDCLV+EDSVIGLQAAT+AGMSCV+TYTSST++Q+F +AIA+YPDLSN++L DL+ LL+
Sbjct: 252 KDCLVVEDSVIGLQAATKAGMSCVITYTSSTSDQNFNDAIAVYPDLSNVKLKDLKTLLQT 311
Query: 318 VVTA 307
+VTA
Sbjct: 312 IVTA 315
>gb|AAM63700.1| unknown [Arabidopsis thaliana]
Length = 319
Score = 95.1 bits (235), Expect = 8e-19
Identities = 48/102 (47%), Positives = 70/102 (68%)
Frame = -1
Query: 675 KLAVCSAATKSSVILCLENLIGIERFQSLDCFLAGDDVKEKKPDPSIYLTASKKLGVSEK 496
K+AVCS + + +V + L+G ER + + F AGD V +KKPDP+IY A++ LGV
Sbjct: 193 KVAVCSTSNEKAVSAIVSCLLGPERAEKIKIF-AGDVVPKKKPDPAIYNLAAETLGVDPS 251
Query: 495 DCLVIEDSVIGLQAATQAGMSCVVTYTSSTAEQDFKEAIAIY 370
C+V+EDS IGL AA AGM+C+VT + TA++DF+ A A++
Sbjct: 252 KCVVVEDSAIGLAAAKAAGMTCIVTKSGYTADEDFENADAVF 293
>ref|NP_566903.1| Expressed protein; protein id: At3g48420.1, supported by cDNA:
26537., supported by cDNA: gi_13877974, supported by
cDNA: gi_17104702 [Arabidopsis thaliana]
gi|13877975|gb|AAK44065.1|AF370250_1 unknown protein
[Arabidopsis thaliana] gi|17104703|gb|AAL34240.1|
unknown protein [Arabidopsis thaliana]
gi|26451286|dbj|BAC42744.1| unknown protein [Arabidopsis
thaliana]
Length = 319
Score = 95.1 bits (235), Expect = 8e-19
Identities = 48/102 (47%), Positives = 70/102 (68%)
Frame = -1
Query: 675 KLAVCSAATKSSVILCLENLIGIERFQSLDCFLAGDDVKEKKPDPSIYLTASKKLGVSEK 496
K+AVCS + + +V + L+G ER + + F AGD V +KKPDP+IY A++ LGV
Sbjct: 193 KVAVCSTSNEKAVSAIVSCLLGPERAEKIKIF-AGDVVPKKKPDPAIYNLAAETLGVDPS 251
Query: 495 DCLVIEDSVIGLQAATQAGMSCVVTYTSSTAEQDFKEAIAIY 370
C+V+EDS IGL AA AGM+C+VT + TA++DF+ A A++
Sbjct: 252 KCVVVEDSAIGLAAAKAAGMTCIVTKSGYTADEDFENADAVF 293
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 548,751,790
Number of Sequences: 1393205
Number of extensions: 11759406
Number of successful extensions: 29881
Number of sequences better than 10.0: 458
Number of HSP's better than 10.0 without gapping: 29071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29856
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29987172312
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
