Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005249A_C01 KMC005249A_c01
(539 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180636.1| hypothetical protein; protein id: At2g30780.1 [... 41 0.008
pir||B84922 hypothetical protein At2g48000 [imported] - Arabidop... 37 0.12
ref|NP_182321.2| hypothetical protein; protein id: At2g48000.1, ... 37 0.12
emb|CAB06334.1| ORFb [Arabidopsis thaliana] 37 0.12
ref|NP_508559.1| F-box domain containing protein family member [... 31 8.4
>ref|NP_180636.1| hypothetical protein; protein id: At2g30780.1 [Arabidopsis
thaliana] gi|25370680|pir||F84712 hypothetical protein
At2g30780 [imported] - Arabidopsis thaliana
gi|2880055|gb|AAC02749.1| hypothetical protein
[Arabidopsis thaliana]
Length = 452
Score = 41.2 bits (95), Expect = 0.008
Identities = 18/35 (51%), Positives = 28/35 (79%)
Frame = -2
Query: 139 EYFKGIKLAGKTRNIDLAVQIFNGAANKGVKTTNI 35
EY KGIK+AG+ R+I+LAV +F+ AA K ++T ++
Sbjct: 106 EYAKGIKIAGRARDINLAVYLFDEAAKKRMQTASV 140
>pir||B84922 hypothetical protein At2g48000 [imported] - Arabidopsis thaliana
gi|4249407|gb|AAD13704.1| hypothetical protein
[Arabidopsis thaliana]
Length = 481
Score = 37.4 bits (85), Expect = 0.12
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = -2
Query: 139 EYFKGIKLAGKTRNIDLAVQIFNGAANKGVKTTN 38
EY KGI ++G+ +N+DLA+ +F+ +ANK N
Sbjct: 119 EYAKGITISGRLKNVDLALSLFHESANKTTSVYN 152
>ref|NP_182321.2| hypothetical protein; protein id: At2g48000.1, supported by cDNA:
gi_20466533 [Arabidopsis thaliana]
gi|20466534|gb|AAM20584.1| unknown protein [Arabidopsis
thaliana] gi|22136460|gb|AAM91308.1| unknown protein
[Arabidopsis thaliana]
Length = 367
Score = 37.4 bits (85), Expect = 0.12
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = -2
Query: 139 EYFKGIKLAGKTRNIDLAVQIFNGAANKGVKTTN 38
EY KGI ++G+ +N+DLA+ +F+ +ANK N
Sbjct: 5 EYAKGITISGRLKNVDLALSLFHESANKTTSVYN 38
>emb|CAB06334.1| ORFb [Arabidopsis thaliana]
Length = 288
Score = 37.4 bits (85), Expect = 0.12
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = -2
Query: 139 EYFKGIKLAGKTRNIDLAVQIFNGAANKGVKTTN 38
EY KGI ++G+ +N+DLA+ +F+ +ANK N
Sbjct: 85 EYAKGITISGRLKNVDLALSLFHESANKTTSVYN 118
>ref|NP_508559.1| F-box domain containing protein family member [Caenorhabditis
elegans] gi|7503063|pir||T16311 hypothetical protein
F40F4.1 - Caenorhabditis elegans
gi|1065520|gb|AAA81436.1| Hypothetical protein F40F4.1
[Caenorhabditis elegans]
Length = 320
Score = 31.2 bits (69), Expect = 8.4
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +1
Query: 145 ICIHGGADIRSHSKSLQLNTWMFKNTNPQKSYFQIDTCKNMLI 273
I I G I S+ +L + W+ K +NP+ YFQID K M +
Sbjct: 198 IAIFGQVAIDSNQLNLFVRHWI-KGSNPRLEYFQIDVPKGMSV 239
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 429,840,704
Number of Sequences: 1393205
Number of extensions: 8421481
Number of successful extensions: 16271
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16270
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
