Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005247A_C01 KMC005247A_c01
(373 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T10800 cellulose synthase (EC 2.4.1.-) catalytic chain celA... 37 0.047
gb|AAC78476.1| cellulose synthase [Populus x canescens] 37 0.062
dbj|BAB09063.1| cellulose synthase catalytic subunit-like protei... 35 0.23
gb|AAO64130.1| putative cellulose synthase catalytic subunit [Ar... 35 0.23
gb|AAO15532.1|AF458083_1 cellulose synthase [Arabidopsis thaliana] 35 0.23
>pir||T10800 cellulose synthase (EC 2.4.1.-) catalytic chain celA2 - upland
cotton (fragment) gi|1706958|gb|AAB37767.1| cellulose
synthase
Length = 685
Score = 37.4 bits (85), Expect = 0.047
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = -1
Query: 373 LPKQNGPVLKQCGVEC 326
LPKQ GPVLKQCGVEC
Sbjct: 670 LPKQTGPVLKQCGVEC 685
>gb|AAC78476.1| cellulose synthase [Populus x canescens]
Length = 1042
Score = 37.0 bits (84), Expect = 0.062
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = -1
Query: 373 LPKQNGPVLKQCGVEC 326
LPKQ GP+LKQCGVEC
Sbjct: 1027 LPKQTGPILKQCGVEC 1042
>dbj|BAB09063.1| cellulose synthase catalytic subunit-like protein [Arabidopsis
thaliana]
Length = 1043
Score = 35.0 bits (79), Expect = 0.23
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = -1
Query: 373 LPKQNGPVLKQCGVEC 326
LPKQ GP+LKQCGV+C
Sbjct: 1028 LPKQTGPLLKQCGVDC 1043
>gb|AAO64130.1| putative cellulose synthase catalytic subunit [Arabidopsis thaliana]
Length = 1049
Score = 35.0 bits (79), Expect = 0.23
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = -1
Query: 373 LPKQNGPVLKQCGVEC 326
LPKQ GP+LKQCGV+C
Sbjct: 1034 LPKQTGPLLKQCGVDC 1049
>gb|AAO15532.1|AF458083_1 cellulose synthase [Arabidopsis thaliana]
Length = 1055
Score = 35.0 bits (79), Expect = 0.23
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = -1
Query: 373 LPKQNGPVLKQCGVEC 326
LPKQ GP+LKQCGV+C
Sbjct: 1040 LPKQTGPLLKQCGVDC 1055
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 297,493,032
Number of Sequences: 1393205
Number of extensions: 5614582
Number of successful extensions: 14492
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 14143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14481
length of database: 448,689,247
effective HSP length: 99
effective length of database: 310,761,952
effective search space used: 7458286848
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
