Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005246A_C02 KMC005246A_c02
(1214 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL36274.1| unknown protein [Arabidopsis thaliana] 235 9e-61
ref|NP_191499.1| putative protein; protein id: At3g59400.1, supp... 234 2e-60
gb|ZP_00104905.1| hypothetical protein [Prochlorococcus marinus ... 115 2e-24
ref|NP_485866.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2... 111 3e-23
ref|ZP_00074217.1| hypothetical protein [Trichodesmium erythraeu... 108 2e-22
>gb|AAL36274.1| unknown protein [Arabidopsis thaliana]
Length = 265
Score = 235 bits (600), Expect = 9e-61
Identities = 132/261 (50%), Positives = 171/261 (64%), Gaps = 15/261 (5%)
Frame = -2
Query: 1096 TNYLHSIHHSLIKHHHH-------SESPPSTLSASLFLKPTNTKTSSITLSNSLLPSPTS 938
TN LH HHS + HH S P++LS +PT+ T S+ S S S +S
Sbjct: 4 TNSLHHHHHSSPSYTHHRNNLHCQSHFGPTSLSLK---QPTSAATFSLICSAS---STSS 57
Query: 937 NSSVTFSVSQTTSSTTPSTTSKSTSLDLLRELLSARNFREADDETRRLLIALAGEPAIKR 758
+++ +VS T +S T + T+ T D+L L +NFR+AD+ETRRLLI ++GE A+KR
Sbjct: 58 STTAVSAVSTTNASATTAETA--TIFDVLENHLVNQNFRQADEETRRLLIQISGEAAVKR 115
Query: 757 GYVFFSEVQFISETDLKAIDELWREHSDNRFGYSVQKRIFEKVDKDFTNFFIKVGWMKKL 578
GYVFFSEV+ IS DL+AID LW +HSD RFGYSVQ++I+ KV KDFT FF+KV WMK L
Sbjct: 116 GYVFFSEVKTISPEDLQAIDNLWIKHSDGRFGYSVQRKIWLKVKKDFTRFFVKVEWMKLL 175
Query: 577 DTEMEQFNYRSFPTEFIWELNDDTPEGHLPLTNALRGTRLLGNIFTHPAF--------DV 422
DTE+ Q+NYR+FP EF WELND+TP GHLPLTNALRGT+LL + +HPAF +
Sbjct: 176 DTEVVQYNYRAFPDEFKWELNDETPLGHLPLTNALRGTQLLKCVLSHPAFATADDNSGET 235
Query: 421 VEEQESGDAVGDNQGKWGTHR 359
+E G AV Q + G +
Sbjct: 236 EDELNRGVAVAKEQAEVGADK 256
>ref|NP_191499.1| putative protein; protein id: At3g59400.1, supported by cDNA:
gi_17380923 [Arabidopsis thaliana]
gi|11357647|pir||T49008 hypothetical protein F25L23.260 -
Arabidopsis thaliana gi|7801690|emb|CAB91610.1| putative
protein [Arabidopsis thaliana] gi|23297787|gb|AAN13026.1|
unknown protein [Arabidopsis thaliana]
Length = 265
Score = 234 bits (597), Expect = 2e-60
Identities = 126/235 (53%), Positives = 163/235 (68%), Gaps = 7/235 (2%)
Frame = -2
Query: 1096 TNYLHSIHHSLIKHHHH-------SESPPSTLSASLFLKPTNTKTSSITLSNSLLPSPTS 938
TN LH HHS + HH S P++LS +PT+ T S+ S S S +S
Sbjct: 4 TNSLHHHHHSSPSYTHHRNNLHCQSHFGPTSLSLK---QPTSAATFSLICSAS---STSS 57
Query: 937 NSSVTFSVSQTTSSTTPSTTSKSTSLDLLRELLSARNFREADDETRRLLIALAGEPAIKR 758
+++ +VS T +S T + T+ T D+L L +NFR+AD+ETRRLLI ++GE A+KR
Sbjct: 58 STTAVSAVSTTNASATTAETA--TIFDVLENHLVNQNFRQADEETRRLLIQISGEAAVKR 115
Query: 757 GYVFFSEVQFISETDLKAIDELWREHSDNRFGYSVQKRIFEKVDKDFTNFFIKVGWMKKL 578
GYVFFSEV+ IS DL+AID LW +HSD RFGYSVQ++I+ KV KDFT FF+KV WMK L
Sbjct: 116 GYVFFSEVKTISPEDLQAIDNLWIKHSDGRFGYSVQRKIWLKVKKDFTRFFVKVEWMKLL 175
Query: 577 DTEMEQFNYRSFPTEFIWELNDDTPEGHLPLTNALRGTRLLGNIFTHPAFDVVEE 413
DTE+ Q+NYR+FP EF WELND+TP GHLPLTNALRGT+LL + +HPAF ++
Sbjct: 176 DTEVVQYNYRAFPDEFKWELNDETPLGHLPLTNALRGTQLLKCVLSHPAFATADD 230
>gb|ZP_00104905.1| hypothetical protein [Prochlorococcus marinus subsp. pastoris str.
CCMP1378]
Length = 244
Score = 115 bits (287), Expect = 2e-24
Identities = 61/155 (39%), Positives = 91/155 (58%)
Frame = -2
Query: 886 STTSKSTSLDLLRELLSARNFREADDETRRLLIALAGEPAIKRGYVFFSEVQFISETDLK 707
+++ K + + L+ L +NF +AD T L LAG+ A RGYVF+SEV +S TDL+
Sbjct: 93 TSSDKDINYEELQLRLLEQNFEDADRLTSSYLRKLAGKLAENRGYVFYSEVNNMSGTDLQ 152
Query: 706 AIDELWREHSDNRFGYSVQKRIFEKVDKDFTNFFIKVGWMKKLDTEMEQFNYRSFPTEFI 527
ID LW +S+ RFG+S+Q ++ + V K + + K+GW K + +P+ F
Sbjct: 153 TIDRLWTIYSNGRFGFSIQAKLLKSVGKKYELLWPKIGWKK-------DGYWTRYPSSFS 205
Query: 526 WELNDDTPEGHLPLTNALRGTRLLGNIFTHPAFDV 422
W L + PEGH+PL N LRG RL+ +I HPA +
Sbjct: 206 WSL--EAPEGHMPLINQLRGVRLMDSILRHPAISL 238
>ref|NP_485866.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25381615|pir||AD2034
hypothetical protein all1826 [imported] - Nostoc sp.
(strain PCC 7120) gi|17130916|dbj|BAB73525.1|
ORF_ID:all1826~hypothetical protein [Nostoc sp. PCC
7120]
Length = 238
Score = 111 bits (277), Expect = 3e-23
Identities = 54/142 (38%), Positives = 89/142 (62%)
Frame = -2
Query: 853 LRELLSARNFREADDETRRLLIALAGEPAIKRGYVFFSEVQFISETDLKAIDELWREHSD 674
L++LL+ ++F+ AD T + +AG A+KR +++F++V DL+ I++LW HS+
Sbjct: 104 LQQLLAQQDFQAADLLTIETMCEIAGPMAVKRKWLYFTDVDSFPTDDLQTINQLWIVHSE 163
Query: 673 NRFGYSVQKRIFEKVDKDFTNFFIKVGWMKKLDTEMEQFNYRSFPTEFIWELNDDTPEGH 494
+FG+SVQ+ I+ + K++ NF+ K+GW N+ +P F W+L P GH
Sbjct: 164 GKFGFSVQRDIWLSLGKNWDNFWPKIGW-------KSGNNWTRYPNSFTWDLT--APRGH 214
Query: 493 LPLTNALRGTRLLGNIFTHPAF 428
LPL+N LRG R+L ++F HPA+
Sbjct: 215 LPLSNQLRGVRVLASLFAHPAW 236
>ref|ZP_00074217.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 240
Score = 108 bits (270), Expect = 2e-22
Identities = 59/154 (38%), Positives = 92/154 (59%)
Frame = -2
Query: 889 PSTTSKSTSLDLLRELLSARNFREADDETRRLLIALAGEPAIKRGYVFFSEVQFISETDL 710
P ++ + L+ L+ ++F EAD T + L L GE AI+R +++FSEV I D+
Sbjct: 94 PINSASNIDYSHLQVKLAHQDFLEADKLTMQKLCELVGEAAIQRKWLYFSEVDSIPIPDM 153
Query: 709 KAIDELWREHSDNRFGYSVQKRIFEKVDKDFTNFFIKVGWMKKLDTEMEQFNYRSFPTEF 530
K I+ +W +S+ +FGYSVQ+ I+ K++ F K+GW K +T + +P EF
Sbjct: 154 KTINNMWLIYSEGKFGYSVQREIWLGSGKNWDKFLPKIGW-KNGNT------WSRYPNEF 206
Query: 529 IWELNDDTPEGHLPLTNALRGTRLLGNIFTHPAF 428
W L+ P+GHLPL+N LRG R+ +I +HPA+
Sbjct: 207 TWNLS--APKGHLPLSNLLRGVRMFASILSHPAW 238
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,109,690,058
Number of Sequences: 1393205
Number of extensions: 28049564
Number of successful extensions: 210559
Number of sequences better than 10.0: 986
Number of HSP's better than 10.0 without gapping: 107763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174425
length of database: 448,689,247
effective HSP length: 126
effective length of database: 273,145,417
effective search space used: 75934425926
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
