Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005245A_C01 KMC005245A_c01
(611 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_084782.1| ATP synthase CF1 epsilon chain [Lotus japonicus... 215 9e-64
emb|CAD23899.1| ATP synthase epsilon subunit [Cornus mas] 202 2e-59
emb|CAD23919.1| ATP synthase epsilon subunit [Pterostyrax hispidus] 204 8e-59
emb|CAD23969.1| ATP synthase epsilon subunit [Montinia caryophyl... 200 8e-59
emb|CAD23902.1| ATP synthase epsilon subunit [Loasa triphylla] 200 1e-58
>ref|NP_084782.1| ATP synthase CF1 epsilon chain [Lotus japonicus]
gi|20137452|sp|Q9BBT9|ATPE_LOTJA ATP synthase epsilon
chain (ATP synthase F1 sector epsilon subunit)
gi|13358963|dbj|BAB33180.1| ATPase epsilon subunit
[Lotus japonicus]
Length = 133
Score = 215 bits (548), Expect(2) = 9e-64
Identities = 108/109 (99%), Positives = 109/109 (99%)
Frame = -2
Query: 433 MTLNLCVLTPNRIVWDSDVKEIILSTNSGQVGILPNHAPLAMALDIGILRIRLNDQWLTM 254
MTLNLCVLTPNRIVWDSDVKEIILSTNSGQVGILPNHAPLAMALDIGILRIRLNDQWLTM
Sbjct: 1 MTLNLCVLTPNRIVWDSDVKEIILSTNSGQVGILPNHAPLAMALDIGILRIRLNDQWLTM 60
Query: 253 ALMGGFARIGNNEITVLVNDAEKGSDIDPQEAQQTLEIAEANLKEAKGQ 107
ALMGGFARIGNNEITVLVNDAEKGSDIDPQEAQQTLEIAEANLKEAKG+
Sbjct: 61 ALMGGFARIGNNEITVLVNDAEKGSDIDPQEAQQTLEIAEANLKEAKGK 109
Score = 50.4 bits (119), Expect(2) = 9e-64
Identities = 25/30 (83%), Positives = 27/30 (89%)
Frame = -3
Query: 123 RRLRAKRQTIEANLALRRARTRVESINMIS 34
+ + KRQTIEANLALRRARTRVESINMIS
Sbjct: 104 KEAKGKRQTIEANLALRRARTRVESINMIS 133
>emb|CAD23899.1| ATP synthase epsilon subunit [Cornus mas]
Length = 132
Score = 202 bits (515), Expect(2) = 2e-59
Identities = 98/108 (90%), Positives = 107/108 (98%)
Frame = -2
Query: 430 TLNLCVLTPNRIVWDSDVKEIILSTNSGQVGILPNHAPLAMALDIGILRIRLNDQWLTMA 251
TLNLCVLTPNRIVWDS+VKEIILSTNSGQ+G+LPNHAP+A A+DIGILRIRLNDQWLTMA
Sbjct: 1 TLNLCVLTPNRIVWDSEVKEIILSTNSGQIGVLPNHAPIATAVDIGILRIRLNDQWLTMA 60
Query: 250 LMGGFARIGNNEITVLVNDAEKGSDIDPQEAQQTLEIAEANLKEAKGQ 107
LMGGFARIGNNEITVLVNDAEKGSDIDPQEAQQTLEIAEANL++A+G+
Sbjct: 61 LMGGFARIGNNEITVLVNDAEKGSDIDPQEAQQTLEIAEANLRKAEGK 108
Score = 48.9 bits (115), Expect(2) = 2e-59
Identities = 24/30 (80%), Positives = 27/30 (90%)
Frame = -3
Query: 123 RRLRAKRQTIEANLALRRARTRVESINMIS 34
R+ KRQTIEANLALRRARTRVE+IN+IS
Sbjct: 103 RKAEGKRQTIEANLALRRARTRVEAINVIS 132
>emb|CAD23919.1| ATP synthase epsilon subunit [Pterostyrax hispidus]
Length = 132
Score = 204 bits (518), Expect(2) = 8e-59
Identities = 99/108 (91%), Positives = 107/108 (98%)
Frame = -2
Query: 430 TLNLCVLTPNRIVWDSDVKEIILSTNSGQVGILPNHAPLAMALDIGILRIRLNDQWLTMA 251
TLNLCVLTPNRIVWDS+VKEIILSTNSGQ+G+LPNHAP+A A+DIGILRIRLNDQWLTMA
Sbjct: 1 TLNLCVLTPNRIVWDSEVKEIILSTNSGQIGVLPNHAPIATAVDIGILRIRLNDQWLTMA 60
Query: 250 LMGGFARIGNNEITVLVNDAEKGSDIDPQEAQQTLEIAEANLKEAKGQ 107
LMGGFARIGNNEITVLVNDAEKGSDIDPQEAQQTLEIAEANLK+A+G+
Sbjct: 61 LMGGFARIGNNEITVLVNDAEKGSDIDPQEAQQTLEIAEANLKKAEGK 108
Score = 45.4 bits (106), Expect(2) = 8e-59
Identities = 22/30 (73%), Positives = 26/30 (86%)
Frame = -3
Query: 123 RRLRAKRQTIEANLALRRARTRVESINMIS 34
++ KRQ IEANLALRRARTRVE+IN+IS
Sbjct: 103 KKAEGKRQIIEANLALRRARTRVEAINVIS 132
>emb|CAD23969.1| ATP synthase epsilon subunit [Montinia caryophyllacea]
Length = 132
Score = 200 bits (509), Expect(2) = 8e-59
Identities = 96/108 (88%), Positives = 106/108 (97%)
Frame = -2
Query: 430 TLNLCVLTPNRIVWDSDVKEIILSTNSGQVGILPNHAPLAMALDIGILRIRLNDQWLTMA 251
TLNLCVLTPNRIVWDS+VKEIILSTNSGQ+G+LPNHAP+A A+DIGILRIRLNDQWLTMA
Sbjct: 1 TLNLCVLTPNRIVWDSEVKEIILSTNSGQIGVLPNHAPIATAVDIGILRIRLNDQWLTMA 60
Query: 250 LMGGFARIGNNEITVLVNDAEKGSDIDPQEAQQTLEIAEANLKEAKGQ 107
LMGGFARIGNNEIT+LVNDAEKGSDIDPQEAQQTLE AEANL++A+G+
Sbjct: 61 LMGGFARIGNNEITILVNDAEKGSDIDPQEAQQTLETAEANLRKAEGK 108
Score = 48.9 bits (115), Expect(2) = 8e-59
Identities = 24/30 (80%), Positives = 27/30 (90%)
Frame = -3
Query: 123 RRLRAKRQTIEANLALRRARTRVESINMIS 34
R+ KRQTIEANLALRRARTRVE+IN+IS
Sbjct: 103 RKAEGKRQTIEANLALRRARTRVEAINVIS 132
>emb|CAD23902.1| ATP synthase epsilon subunit [Loasa triphylla]
Length = 132
Score = 200 bits (508), Expect(2) = 1e-58
Identities = 96/108 (88%), Positives = 107/108 (98%)
Frame = -2
Query: 430 TLNLCVLTPNRIVWDSDVKEIILSTNSGQVGILPNHAPLAMALDIGILRIRLNDQWLTMA 251
TLNLCVLTPNRIVWDS+VKEIILSTNSGQ+G+LPNHAP+A A+DIGILRIRLNDQW+TMA
Sbjct: 1 TLNLCVLTPNRIVWDSEVKEIILSTNSGQIGVLPNHAPIATAVDIGILRIRLNDQWVTMA 60
Query: 250 LMGGFARIGNNEITVLVNDAEKGSDIDPQEAQQTLEIAEANLKEAKGQ 107
LMGGFARIGNNEITVLVNDAEKGSDI+PQEAQQTLEIAEANL++A+G+
Sbjct: 61 LMGGFARIGNNEITVLVNDAEKGSDIEPQEAQQTLEIAEANLRKAEGK 108
Score = 48.9 bits (115), Expect(2) = 1e-58
Identities = 24/30 (80%), Positives = 27/30 (90%)
Frame = -3
Query: 123 RRLRAKRQTIEANLALRRARTRVESINMIS 34
R+ KRQTIEANLALRRARTRVE+IN+IS
Sbjct: 103 RKAEGKRQTIEANLALRRARTRVEAINVIS 132
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,690,171
Number of Sequences: 1393205
Number of extensions: 9543368
Number of successful extensions: 23500
Number of sequences better than 10.0: 1936
Number of HSP's better than 10.0 without gapping: 22762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23413
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
