Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005241A_C01 KMC005241A_c01
(737 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK00447.1|AC060755_17 unknown protein [Oryza sativa] 102 6e-21
ref|NP_564406.1| expressed protein; protein id: At1g32700.1, sup... 100 2e-20
gb|AAM63219.1| unknown [Arabidopsis thaliana] 100 2e-20
gb|AAF25968.1|AC017118_5 F6N18.8 [Arabidopsis thaliana] 100 2e-20
ref|NP_565135.1| expressed protein; protein id: At1g76590.1, sup... 94 2e-18
>gb|AAK00447.1|AC060755_17 unknown protein [Oryza sativa]
Length = 254
Score = 102 bits (254), Expect = 6e-21
Identities = 54/117 (46%), Positives = 71/117 (60%), Gaps = 3/117 (2%)
Frame = -1
Query: 737 ARVLFLNERPQPQSGKG-IAHICEICGRSLLDPFRFCSLGCKLEGIKKNGDASFVLGVKN 561
ARV+FLNERPQ ++GKG +A+ICE+C RSLLD FRFCSLGCK+ G + +
Sbjct: 133 ARVVFLNERPQHKAGKGAVANICEVCSRSLLDNFRFCSLGCKVVGCSPHAATAAATATAT 192
Query: 560 EELMMTM-DTSTTSSRSQQEELREGSTQDMYPATPSPPPS-SARRRKGIPHRAPFGS 396
+ +S S + + + P+TP PPP+ +RRKGIPHRAPFGS
Sbjct: 193 AARRKRLRHAHAMASTSDSDNSTSPAKRSFTPSTPPPPPTLPPKRRKGIPHRAPFGS 249
>ref|NP_564406.1| expressed protein; protein id: At1g32700.1, supported by cDNA:
206224. [Arabidopsis thaliana]
Length = 213
Score = 100 bits (249), Expect = 2e-20
Identities = 55/119 (46%), Positives = 70/119 (58%), Gaps = 6/119 (5%)
Frame = -1
Query: 737 ARVLFLNERPQPQSGKGIAHICEICGRSLLDPFRFCSLGCKLEGIKKNGDASFVLGVKNE 558
A+V+FLNERPQP+ GKG+ + CE+C RSL+D FRFCSLGCK+ GI K + E
Sbjct: 97 AKVVFLNERPQPRPGKGVINTCEVCYRSLVDSFRFCSLGCKISGISKK--------KRKE 148
Query: 557 ELMMTMDTSTTSSRSQQEELREGSTQDMYPATPSPPPSS------ARRRKGIPHRAPFG 399
D+ + S + L++ TPS PP S A+RRKGIPHRAPFG
Sbjct: 149 WTNNLSDSDDSYSSTSIGRLKKNDDIMNNSFTPSTPPLSAVNRRIAKRRKGIPHRAPFG 207
>gb|AAM63219.1| unknown [Arabidopsis thaliana]
Length = 213
Score = 100 bits (249), Expect = 2e-20
Identities = 55/119 (46%), Positives = 70/119 (58%), Gaps = 6/119 (5%)
Frame = -1
Query: 737 ARVLFLNERPQPQSGKGIAHICEICGRSLLDPFRFCSLGCKLEGIKKNGDASFVLGVKNE 558
A+V+FLNERPQP+ GKG+ + CE+C RSL+D FRFCSLGCK+ GI K + E
Sbjct: 97 AKVVFLNERPQPRPGKGVINTCEVCYRSLVDSFRFCSLGCKISGISKK--------KRKE 148
Query: 557 ELMMTMDTSTTSSRSQQEELREGSTQDMYPATPSPPPSS------ARRRKGIPHRAPFG 399
D+ + S + L++ TPS PP S A+RRKGIPHRAPFG
Sbjct: 149 WTNNLSDSDDSYSSTSIGRLKKNDDIMNNSFTPSTPPLSAVNRRIAKRRKGIPHRAPFG 207
>gb|AAF25968.1|AC017118_5 F6N18.8 [Arabidopsis thaliana]
Length = 270
Score = 100 bits (249), Expect = 2e-20
Identities = 55/119 (46%), Positives = 70/119 (58%), Gaps = 6/119 (5%)
Frame = -1
Query: 737 ARVLFLNERPQPQSGKGIAHICEICGRSLLDPFRFCSLGCKLEGIKKNGDASFVLGVKNE 558
A+V+FLNERPQP+ GKG+ + CE+C RSL+D FRFCSLGCK+ GI K + E
Sbjct: 154 AKVVFLNERPQPRPGKGVINTCEVCYRSLVDSFRFCSLGCKISGISKK--------KRKE 205
Query: 557 ELMMTMDTSTTSSRSQQEELREGSTQDMYPATPSPPPSS------ARRRKGIPHRAPFG 399
D+ + S + L++ TPS PP S A+RRKGIPHRAPFG
Sbjct: 206 WTNNLSDSDDSYSSTSIGRLKKNDDIMNNSFTPSTPPLSAVNRRIAKRRKGIPHRAPFG 264
>ref|NP_565135.1| expressed protein; protein id: At1g76590.1, supported by cDNA:
114376. [Arabidopsis thaliana]
Length = 245
Score = 94.0 bits (232), Expect = 2e-18
Identities = 56/143 (39%), Positives = 74/143 (51%), Gaps = 31/143 (21%)
Frame = -1
Query: 737 ARVLFLNERPQPQSGKGIAHICEICGRSLLDPFRFCSLGCKLEGIKKNGDASFVLGVKN- 561
AR++FLNERPQP+ GKG+ + CEIC RSLLD FRFCSLGCKL G+K++ +F L K+
Sbjct: 103 ARIVFLNERPQPRIGKGVTNTCEICCRSLLDSFRFCSLGCKLGGMKRDPSLTFSLRGKHG 162
Query: 560 ------------------------EELMMTMDTSTTSSRSQQEELREGSTQDM--YPATP 459
LM + ST + S+ D + +P
Sbjct: 163 REYEGEWESDEATTPTKIRKTCAFNRLMSGLSISTVKCDYLSGDQPSSSSGDESGFKLSP 222
Query: 458 SPPP----SSARRRKGIPHRAPF 402
PP ++ RRKG+PHRAPF
Sbjct: 223 GTPPIYNHRNSSRRKGVPHRAPF 245
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 692,549,778
Number of Sequences: 1393205
Number of extensions: 16866582
Number of successful extensions: 47515
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 44694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47305
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35188080875
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
