Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005238A_C01 KMC005238A_c01
(551 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200149.1| pectinesterase; protein id: At5g53370.1, suppor... 152 3e-36
gb|AAG40402.1|AF325050_1 AT3g49220 [Arabidopsis thaliana] 150 1e-35
ref|NP_190491.1| pectinesterase - like protein; protein id: At3g... 150 1e-35
pir||T49241 pectinesterase-like protein - Arabidopsis thaliana g... 134 1e-30
gb|AAK81875.1| pectin methylesterase PME1 [Vitis vinifera] 133 2e-30
>ref|NP_200149.1| pectinesterase; protein id: At5g53370.1, supported by cDNA:
gi_13507548, supported by cDNA: gi_15293286 [Arabidopsis
thaliana] gi|9759184|dbj|BAB09799.1| pectinesterase
[Arabidopsis thaliana]
gi|13507549|gb|AAK28637.1|AF360340_1 putative
pectinesterase [Arabidopsis thaliana]
gi|15293287|gb|AAK93754.1| putative pectinesterase
[Arabidopsis thaliana]
Length = 587
Score = 152 bits (384), Expect = 3e-36
Identities = 68/87 (78%), Positives = 77/87 (88%)
Frame = -1
Query: 551 VYMLSYMSDHVHPRGWLEWNGDFALDTLYYGEYMNYGPGAAIGQRVKWPGYRIITSTVEA 372
VYM+S M DH+ PRGWLEWNG FALD+LYYGEYMN G G+ IGQRVKWPGY +ITSTVEA
Sbjct: 500 VYMMSDMGDHIDPRGWLEWNGPFALDSLYYGEYMNKGLGSGIGQRVKWPGYHVITSTVEA 559
Query: 371 DRFTVAQFISGSSWLPSTGVAYLAGLS 291
+FTVAQFISGSSWLPSTGV++ +GLS
Sbjct: 560 SKFTVAQFISGSSWLPSTGVSFFSGLS 586
>gb|AAG40402.1|AF325050_1 AT3g49220 [Arabidopsis thaliana]
Length = 144
Score = 150 bits (379), Expect = 1e-35
Identities = 66/87 (75%), Positives = 76/87 (86%)
Frame = -1
Query: 551 VYMLSYMSDHVHPRGWLEWNGDFALDTLYYGEYMNYGPGAAIGQRVKWPGYRIITSTVEA 372
VYM+SY+ HVH RGWLEWN FALDTLYYGEY+N GPG+ +GQRV WPGYR+I ST EA
Sbjct: 57 VYMMSYIGGHVHTRGWLEWNTTFALDTLYYGEYLNSGPGSGLGQRVSWPGYRVINSTAEA 116
Query: 371 DRFTVAQFISGSSWLPSTGVAYLAGLS 291
+RFTVA+FI GSSWLPSTGV++LAGLS
Sbjct: 117 NRFTVAEFIYGSSWLPSTGVSFLAGLS 143
>ref|NP_190491.1| pectinesterase - like protein; protein id: At3g49220.1, supported
by cDNA: gi_16648928 [Arabidopsis thaliana]
gi|11279196|pir||T45827 pectinesterase-like protein -
Arabidopsis thaliana gi|6723392|emb|CAB66401.1|
pectinesterase-like protein [Arabidopsis thaliana]
gi|16648929|gb|AAL24316.1| pectinesterase-like protein
[Arabidopsis thaliana]
Length = 598
Score = 150 bits (379), Expect = 1e-35
Identities = 66/87 (75%), Positives = 76/87 (86%)
Frame = -1
Query: 551 VYMLSYMSDHVHPRGWLEWNGDFALDTLYYGEYMNYGPGAAIGQRVKWPGYRIITSTVEA 372
VYM+SY+ HVH RGWLEWN FALDTLYYGEY+N GPG+ +GQRV WPGYR+I ST EA
Sbjct: 511 VYMMSYIGGHVHTRGWLEWNTTFALDTLYYGEYLNSGPGSGLGQRVSWPGYRVINSTAEA 570
Query: 371 DRFTVAQFISGSSWLPSTGVAYLAGLS 291
+RFTVA+FI GSSWLPSTGV++LAGLS
Sbjct: 571 NRFTVAEFIYGSSWLPSTGVSFLAGLS 597
>pir||T49241 pectinesterase-like protein - Arabidopsis thaliana
gi|7649367|emb|CAB89048.1| pectinesterase-like protein
[Arabidopsis thaliana] gi|17979141|gb|AAL49828.1|
putative pectinesterase [Arabidopsis thaliana]
gi|20465719|gb|AAM20328.1| putative pectinesterase
[Arabidopsis thaliana]
Length = 527
Score = 134 bits (336), Expect = 1e-30
Identities = 55/86 (63%), Positives = 73/86 (83%)
Frame = -1
Query: 551 VYMLSYMSDHVHPRGWLEWNGDFALDTLYYGEYMNYGPGAAIGQRVKWPGYRIITSTVEA 372
V+M +YMSD ++P GWLEWNG+FALDTLYYGEYMN GPGA++ +RVKWPGY ++ ++ EA
Sbjct: 440 VFMQNYMSDAINPVGWLEWNGNFALDTLYYGEYMNSGPGASLDRRVKWPGYHVLNTSAEA 499
Query: 371 DRFTVAQFISGSSWLPSTGVAYLAGL 294
+ FTV+Q I G+ WLPSTG+ ++AGL
Sbjct: 500 NNFTVSQLIQGNLWLPSTGITFIAGL 525
>gb|AAK81875.1| pectin methylesterase PME1 [Vitis vinifera]
Length = 531
Score = 133 bits (334), Expect = 2e-30
Identities = 55/87 (63%), Positives = 70/87 (80%)
Frame = -1
Query: 551 VYMLSYMSDHVHPRGWLEWNGDFALDTLYYGEYMNYGPGAAIGQRVKWPGYRIITSTVEA 372
+ M SY+SD + P GWLEWNGDFALDTLYYGEYMNYGP A +G RV+WPG+ ++ ++ +A
Sbjct: 444 IIMKSYISDAIRPEGWLEWNGDFALDTLYYGEYMNYGPSAGLGSRVQWPGFHLLNNSAQA 503
Query: 371 DRFTVAQFISGSSWLPSTGVAYLAGLS 291
FTV +FI+G+ WLPSTGV Y AGL+
Sbjct: 504 ANFTVTEFIAGNLWLPSTGVKYSAGLA 530
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 493,427,982
Number of Sequences: 1393205
Number of extensions: 11293612
Number of successful extensions: 25486
Number of sequences better than 10.0: 191
Number of HSP's better than 10.0 without gapping: 24563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25407
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
