Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005234A_C01 KMC005234A_c01
(737 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191008.1| nucleoid DNA-binding - like protein; protein id... 192 5e-48
gb|AAM66983.1| nucleoid DNA-binding-like protein [Arabidopsis th... 192 5e-48
ref|NP_196320.1| nucleoid DNA-binding-like protein; protein id: ... 180 2e-44
dbj|BAC15479.1| similar to nucleoid DNA-binding-like protein [Or... 164 2e-39
dbj|BAB90778.1| putative nucleoid DNA-binding-like protein [Oryz... 141 1e-32
>ref|NP_191008.1| nucleoid DNA-binding - like protein; protein id: At3g54400.1,
supported by cDNA: 8987., supported by cDNA: gi_17979256
[Arabidopsis thaliana] gi|11358589|pir||T47599 nucleoid
DNA-binding-like protein - Arabidopsis thaliana
gi|7288018|emb|CAB81805.1| nucleoid DNA-binding-like
protein [Arabidopsis thaliana]
gi|17979257|gb|AAL49945.1| AT3g54400/T12E18_90
[Arabidopsis thaliana] gi|21700851|gb|AAM70549.1|
AT3g54400/T12E18_90 [Arabidopsis thaliana]
Length = 425
Score = 192 bits (487), Expect = 5e-48
Identities = 92/122 (75%), Positives = 108/122 (88%)
Frame = -3
Query: 735 FDSGTVFTRLVEPAYTAVRNEFRRRVGRRVPVTTLGGFDTCYTGSIVVPPITFMFSGMNV 556
FDSGTV+TRLVEPAY AVRNEFRRRV + T+LGGFDTCY+GS+V P +TFMF+GMNV
Sbjct: 305 FDSGTVYTRLVEPAYVAVRNEFRRRV-KNANATSLGGFDTCYSGSVVFPSVTFMFAGMNV 363
Query: 555 TLPTDNIVIHSTAGSITCLAMAVTPNNVNSVLNVIANMQQQNHRVLYDVPNSRLGIAREL 376
TLP DN++IHS+AG+++CLAMA P NVNSVLNVIA+MQQQNHRVL DVPNSRLGI+RE
Sbjct: 364 TLPPDNLLIHSSAGNLSCLAMAAAPVNVNSVLNVIASMQQQNHRVLIDVPNSRLGISRET 423
Query: 375 CS 370
C+
Sbjct: 424 CT 425
>gb|AAM66983.1| nucleoid DNA-binding-like protein [Arabidopsis thaliana]
Length = 425
Score = 192 bits (487), Expect = 5e-48
Identities = 92/122 (75%), Positives = 108/122 (88%)
Frame = -3
Query: 735 FDSGTVFTRLVEPAYTAVRNEFRRRVGRRVPVTTLGGFDTCYTGSIVVPPITFMFSGMNV 556
FDSGTV+TRLVEPAY AVRNEFRRRV + T+LGGFDTCY+GS+V P +TFMF+GMNV
Sbjct: 305 FDSGTVYTRLVEPAYVAVRNEFRRRV-KNANATSLGGFDTCYSGSVVFPSVTFMFAGMNV 363
Query: 555 TLPTDNIVIHSTAGSITCLAMAVTPNNVNSVLNVIANMQQQNHRVLYDVPNSRLGIAREL 376
TLP DN++IHS+AG+++CLAMA P NVNSVLNVIA+MQQQNHRVL DVPNSRLGI+RE
Sbjct: 364 TLPPDNLLIHSSAGNLSCLAMAAAPVNVNSVLNVIASMQQQNHRVLIDVPNSRLGISRET 423
Query: 375 CS 370
C+
Sbjct: 424 CT 425
>ref|NP_196320.1| nucleoid DNA-binding-like protein; protein id: At5g07030.1,
supported by cDNA: 15560. [Arabidopsis thaliana]
gi|9759559|dbj|BAB11161.1| nucleoid DNA-binding-like
protein [Arabidopsis thaliana]
gi|21553652|gb|AAM62745.1| nucleoid DNA-binding-like
protein [Arabidopsis thaliana]
Length = 439
Score = 180 bits (457), Expect = 2e-44
Identities = 86/123 (69%), Positives = 102/123 (82%), Gaps = 1/123 (0%)
Frame = -3
Query: 735 FDSGTVFTRLVEPAYTAVRNEFRRRVGRRVPV-TTLGGFDTCYTGSIVVPPITFMFSGMN 559
FDSGTV+TRL +P Y AVRNEFR+RV V T+LGGFDTCY+G + VP ITFMF G+N
Sbjct: 317 FDSGTVYTRLAKPVYEAVRNEFRKRVKPTTAVVTSLGGFDTCYSGQVKVPTITFMFKGVN 376
Query: 558 VTLPTDNIVIHSTAGSITCLAMAVTPNNVNSVLNVIANMQQQNHRVLYDVPNSRLGIARE 379
+T+P DN+++HSTAGS +CLAMA P NVNSV+NVIA+MQQQNHRVL DVPN RLG+ARE
Sbjct: 377 MTMPADNLMLHSTAGSTSCLAMAAAPENVNSVVNVIASMQQQNHRVLIDVPNGRLGLARE 436
Query: 378 LCS 370
CS
Sbjct: 437 RCS 439
>dbj|BAC15479.1| similar to nucleoid DNA-binding-like protein [Oryza sativa
(japonica cultivar-group)] gi|22831290|dbj|BAC16145.1|
similar to nucleoid DNA-binding-like protein [Oryza
sativa (japonica cultivar-group)]
Length = 449
Score = 164 bits (414), Expect = 2e-39
Identities = 77/122 (63%), Positives = 97/122 (79%), Gaps = 1/122 (0%)
Frame = -3
Query: 732 DSGTVFTRLVEPAYTAVRNEFRRRVGR-RVPVTTLGGFDTCYTGSIVVPPITFMFSGMNV 556
DSGT+FTRLV P Y A+R+E RRRVG V++LGGFDTCY ++ PP+T +F GM V
Sbjct: 326 DSGTMFTRLVAPVYLALRDEVRRRVGAGAAAVSSLGGFDTCYNTTVAWPPVTLLFDGMQV 385
Query: 555 TLPTDNIVIHSTAGSITCLAMAVTPNNVNSVLNVIANMQQQNHRVLYDVPNSRLGIAREL 376
TLP +N+VIH+T G+ +CLAMA P+ VN+VLNVIA+MQQQNHRVL+DVPN R+G ARE
Sbjct: 386 TLPEENVVIHTTYGTTSCLAMAAAPDGVNTVLNVIASMQQQNHRVLFDVPNGRVGFARES 445
Query: 375 CS 370
C+
Sbjct: 446 CT 447
>dbj|BAB90778.1| putative nucleoid DNA-binding-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 445
Score = 141 bits (355), Expect = 1e-32
Identities = 72/124 (58%), Positives = 95/124 (76%), Gaps = 3/124 (2%)
Frame = -3
Query: 732 DSGTVFTRLVEPAYTAVRNEFRRRVGRRVPVTT-LGGFDTCYTGSIVVPPITFMFSG-MN 559
D+GT+FTRL P Y AVR+ FR RV R PV LGGFDTCY ++ VP +TFMF+G +
Sbjct: 323 DAGTMFTRLAAPVYAAVRDAFRGRV--RTPVAPPLGGFDTCYNVTVSVPTVTFMFAGAVA 380
Query: 558 VTLPTDNIVIHSTAGSITCLAMAVTPNN-VNSVLNVIANMQQQNHRVLYDVPNSRLGIAR 382
VTLP +N++IHS++G + CLAMA P++ VN+ LNV+A+MQQQN RVL+DV N R+G +R
Sbjct: 381 VTLPEENVMIHSSSGGVACLAMAAGPSDGVNAALNVLASMQQQNQRVLFDVANGRVGFSR 440
Query: 381 ELCS 370
ELC+
Sbjct: 441 ELCT 444
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 628,508,154
Number of Sequences: 1393205
Number of extensions: 13412284
Number of successful extensions: 38635
Number of sequences better than 10.0: 110
Number of HSP's better than 10.0 without gapping: 36241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38382
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35188080875
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
