Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005232A_C01 KMC005232A_c01
(605 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM63700.1| unknown [Arabidopsis thaliana] 225 3e-58
ref|NP_566903.1| Expressed protein; protein id: At3g48420.1, sup... 224 5e-58
pir||T06700 hypothetical protein T29H11.60 - Arabidopsis thalian... 221 6e-57
gb|AAK53865.1|AC016781_19 Putative hydrolase [Oryza sativa] 157 1e-37
gb|AAM65187.1| unknown [Arabidopsis thaliana] 92 7e-18
>gb|AAM63700.1| unknown [Arabidopsis thaliana]
Length = 319
Score = 225 bits (574), Expect = 3e-58
Identities = 114/129 (88%), Positives = 121/129 (93%)
Frame = -1
Query: 605 GVNVAVCSTSNEKAVSAIVSFLLGPERAEKIQIFAGDVVHRKKPDPAIYILAANTLGVEP 426
GV VAVCSTSNEKAVSAIVS LLGPERAEKI+IFAGDVV +KKPDPAIY LAA TLGV+P
Sbjct: 191 GVKVAVCSTSNEKAVSAIVSCLLGPERAEKIKIFAGDVVPKKKPDPAIYNLAAETLGVDP 250
Query: 425 SRCVVVEDSAIGLAAAKAAGMKCIITKSGYTADEDFLNADAVFDFIGDPPEERFDLAFCG 246
S+CVVVEDSAIGLAAAKAAGM CI+TKSGYTADEDF NADAVFD IGDPPEERFDLAFCG
Sbjct: 251 SKCVVVEDSAIGLAAAKAAGMTCIVTKSGYTADEDFENADAVFDCIGDPPEERFDLAFCG 310
Query: 245 SLLEKQYVS 219
SLL+KQ+VS
Sbjct: 311 SLLQKQFVS 319
>ref|NP_566903.1| Expressed protein; protein id: At3g48420.1, supported by cDNA:
26537., supported by cDNA: gi_13877974, supported by
cDNA: gi_17104702 [Arabidopsis thaliana]
gi|13877975|gb|AAK44065.1|AF370250_1 unknown protein
[Arabidopsis thaliana] gi|17104703|gb|AAL34240.1|
unknown protein [Arabidopsis thaliana]
gi|26451286|dbj|BAC42744.1| unknown protein [Arabidopsis
thaliana]
Length = 319
Score = 224 bits (572), Expect = 5e-58
Identities = 114/129 (88%), Positives = 120/129 (92%)
Frame = -1
Query: 605 GVNVAVCSTSNEKAVSAIVSFLLGPERAEKIQIFAGDVVHRKKPDPAIYILAANTLGVEP 426
GV VAVCSTSNEKAVSAIVS LLGPERAEKI+IFAGDVV +KKPDPAIY LAA TLGV+P
Sbjct: 191 GVKVAVCSTSNEKAVSAIVSCLLGPERAEKIKIFAGDVVPKKKPDPAIYNLAAETLGVDP 250
Query: 425 SRCVVVEDSAIGLAAAKAAGMKCIITKSGYTADEDFLNADAVFDFIGDPPEERFDLAFCG 246
S+CVVVEDSAIGLAAAKAAGM CI+TKSGYTADEDF NADAVFD IGDPPEERFDLAFCG
Sbjct: 251 SKCVVVEDSAIGLAAAKAAGMTCIVTKSGYTADEDFENADAVFDCIGDPPEERFDLAFCG 310
Query: 245 SLLEKQYVS 219
SLL KQ+VS
Sbjct: 311 SLLRKQFVS 319
>pir||T06700 hypothetical protein T29H11.60 - Arabidopsis thaliana
gi|4678346|emb|CAB41156.1| putative protein [Arabidopsis
thaliana]
Length = 686
Score = 221 bits (563), Expect = 6e-57
Identities = 112/127 (88%), Positives = 117/127 (91%)
Frame = -1
Query: 605 GVNVAVCSTSNEKAVSAIVSFLLGPERAEKIQIFAGDVVHRKKPDPAIYILAANTLGVEP 426
GV VAVCSTSNEKAVSAIVS LLGPERAEKI+IFAGDVV +KKPDPAIY LAA TLGV+P
Sbjct: 191 GVKVAVCSTSNEKAVSAIVSCLLGPERAEKIKIFAGDVVPKKKPDPAIYNLAAETLGVDP 250
Query: 425 SRCVVVEDSAIGLAAAKAAGMKCIITKSGYTADEDFLNADAVFDFIGDPPEERFDLAFCG 246
S+CVVVEDSAIGLAAAKAAGM CI+TKSGYTADEDF NADAVFD IGDPPEERFDLAFCG
Sbjct: 251 SKCVVVEDSAIGLAAAKAAGMTCIVTKSGYTADEDFENADAVFDCIGDPPEERFDLAFCG 310
Query: 245 SLLEKQY 225
SLL K Y
Sbjct: 311 SLLRKHY 317
>gb|AAK53865.1|AC016781_19 Putative hydrolase [Oryza sativa]
Length = 383
Score = 157 bits (396), Expect = 1e-37
Identities = 80/93 (86%), Positives = 84/93 (90%)
Frame = -1
Query: 605 GVNVAVCSTSNEKAVSAIVSFLLGPERAEKIQIFAGDVVHRKKPDPAIYILAANTLGVEP 426
GV VAVCSTSNEKAVSAIVS LLGP+RAEKI IFAGDVV RKKPDPAIY+LAA TLGV+P
Sbjct: 192 GVKVAVCSTSNEKAVSAIVSCLLGPDRAEKITIFAGDVVPRKKPDPAIYLLAATTLGVDP 251
Query: 425 SRCVVVEDSAIGLAAAKAAGMKCIITKSGYTAD 327
S CVVVEDS IGLAAAKAAGMKCI+TKSGY D
Sbjct: 252 SSCVVVEDSTIGLAAAKAAGMKCIVTKSGYILD 284
>gb|AAM65187.1| unknown [Arabidopsis thaliana]
Length = 316
Score = 91.7 bits (226), Expect = 7e-18
Identities = 51/104 (49%), Positives = 66/104 (63%), Gaps = 1/104 (0%)
Frame = -1
Query: 605 GVNVAVCSTSNEKAVSAIVSFLLGPERAEKIQIF-AGDVVHRKKPDPAIYILAANTLGVE 429
G +AVCS + + +V + LL ER + + F AGD V KKPDP+IYI AA LGV
Sbjct: 191 GKKLAVCSAATKSSVILCLENLLDIERFQGLDCFLAGDDVKEKKPDPSIYITAAEKLGVS 250
Query: 428 PSRCVVVEDSAIGLAAAKAAGMKCIITKSGYTADEDFLNADAVF 297
C+VV DS IGL AA AGM C+IT + T+D+DF +A AV+
Sbjct: 251 VKDCLVVGDSVIGLQAATKAGMSCVITYTSSTSDQDFNDAIAVY 294
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 514,798,595
Number of Sequences: 1393205
Number of extensions: 11094384
Number of successful extensions: 28686
Number of sequences better than 10.0: 524
Number of HSP's better than 10.0 without gapping: 27714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28635
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
