Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005228A_C01 KMC005228A_c01
(535 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC56862.1| AP2/ERF-domain protein [Solanum tuberosum] 149 2e-35
ref|NP_188299.1| AP2 domain protein RAP2.3; protein id: At3g1677... 137 6e-32
emb|CAA05084.1| putative Ckc2 [Arabidopsis thaliana] 137 1e-31
ref|NP_683565.1| AP2 domain protein RAP2.2; protein id: At3g1423... 135 4e-31
emb|CAC12822.1| AP2 domain-containing transcription factor [Nico... 134 7e-31
>dbj|BAC56862.1| AP2/ERF-domain protein [Solanum tuberosum]
Length = 264
Score = 149 bits (376), Expect = 2e-35
Identities = 84/166 (50%), Positives = 109/166 (65%)
Frame = +2
Query: 32 MCGGAIISDFIDEYPNRGRRLTTGDLCYDLDTLSDVFTSSSTHQPPSFHFDDVIPIPNNQ 211
MCGGAIISD+ + N R+L+ DL +LD +SD ++SSS+ + P+ ++
Sbjct: 1 MCGGAIISDY-EPAGNFYRKLSARDLWAELDPISDYWSSSSSSSTVENPYSAQSPVTHSV 59
Query: 212 GVASSCEEKKRVMIEVEEKGSDEKSGESEEGIKKGKRVRKNLYRGIRQRPWGKWAAEIRD 391
+ K ++ KG+ E E+ G R RKN YRGIRQRPWGKWAAEIRD
Sbjct: 60 DKPKKSDSGKSNQLK---KGNKTVKVEKEKST--GPRQRKNKYRGIRQRPWGKWAAEIRD 114
Query: 392 PRKGVRVGLGTFNTAEEAAQAYDDAAKRIRGDKAKLNFPDKPEPSE 529
P+KGVRV LGTFNTAE+AA+AYD+AAKRIRG+KAKLNFP P++
Sbjct: 115 PQKGVRVWLGTFNTAEDAARAYDEAAKRIRGNKAKLNFPAPSPPAK 160
>ref|NP_188299.1| AP2 domain protein RAP2.3; protein id: At3g16770.1, supported by
cDNA: 35981., supported by cDNA: gi_14334853, supported
by cDNA: gi_16649094, supported by cDNA: gi_2281630
[Arabidopsis thaliana] gi|27735162|sp|P42736|AP23_ARATH
AP2 domain transcription factor RAP2.3 (Related to AP2
protein 3) (Cadmium-induced protein AS30)
gi|2281631|gb|AAC49769.1| AP2 domain containing protein
RAP2.3 [Arabidopsis thaliana]
gi|11994632|dbj|BAB02769.1| AP2 domain transcription
factor RAP2.3 [Arabidopsis thaliana]
gi|14334854|gb|AAK59605.1| putative AP2 domain
containing protein RAP2.3 [Arabidopsis thaliana]
gi|16649095|gb|AAL24399.1| AP2 domain transcription
factor RAP2.3 [Arabidopsis thaliana]
gi|21593082|gb|AAM65031.1| AP2 domain containing protein
RAP2.3 [Arabidopsis thaliana] gi|23296611|gb|AAN13131.1|
putative AP2 domain containing protein RAP2.3
[Arabidopsis thaliana]
Length = 248
Score = 137 bits (346), Expect = 6e-32
Identities = 85/174 (48%), Positives = 103/174 (58%), Gaps = 7/174 (4%)
Frame = +2
Query: 32 MCGGAIISDFIDEYPN-RGRRLTTGDLCYDLDTLS-----DVFTSSSTHQPPSFHFDDVI 193
MCGGAIISD+ +GR+LT +L +LD + +++S H
Sbjct: 1 MCGGAIISDYAPLVTKAKGRKLTAEELWSELDASAADDFWGFYSTSKLH----------- 49
Query: 194 PIPNNQGVASSCEEKKRVMIEVEEKGSDEKSGESEEGIKKGKR-VRKNLYRGIRQRPWGK 370
P NQ + V+E+ + E+ + GKR RKN+YRGIR+RPWGK
Sbjct: 50 --PTNQ-------------VNVKEEAV-----KKEQATEPGKRRKRKNVYRGIRKRPWGK 89
Query: 371 WAAEIRDPRKGVRVGLGTFNTAEEAAQAYDDAAKRIRGDKAKLNFPDKPEPSEP 532
WAAEIRDPRKGVRV LGTFNTAEEAA AYD AAK+IRGDKAKLNFPD P P
Sbjct: 90 WAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPDLHHPPPP 143
>emb|CAA05084.1| putative Ckc2 [Arabidopsis thaliana]
Length = 246
Score = 137 bits (344), Expect = 1e-31
Identities = 85/174 (48%), Positives = 105/174 (59%), Gaps = 7/174 (4%)
Frame = +2
Query: 32 MCGGAIISDFIDEYPN-RGRRLTTGDLCYDLDTLS-----DVFTSSSTHQPPSFHFDDVI 193
MCGGAIISD+ +GR+LT +L +LD + +++S H
Sbjct: 1 MCGGAIISDYAPLVTKAKGRKLTAEELWSELDASAADDFWGFYSTSKLH----------- 49
Query: 194 PIPNNQGVASSCEEKKRVMIEVEEKGSDEKSGESEEGIKKGKRVRKNLYRGIRQRPWGKW 373
P NQ + V+E+ + +K +E G +R RKN+YRGIR+RPWGKW
Sbjct: 50 --PTNQ-------------VNVKEEEAVKKEQATEPG---KRRKRKNVYRGIRKRPWGKW 91
Query: 374 AAEIRDPRKGVRVGLGTFNTAEEAAQAYDDAAKRIRGDKAKLNFPD-KPEPSEP 532
AAEIRDPRKGVRV LGTFNTAEEAA AYD AAK+IRG+KAKLNFPD PS P
Sbjct: 92 AAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGEKAKLNFPDLDHHPSTP 145
>ref|NP_683565.1| AP2 domain protein RAP2.2; protein id: At3g14230.2, supported by
cDNA: gi_15450917 [Arabidopsis thaliana]
gi|9279571|dbj|BAB01029.1| transcription factor
EREBP-like protein [Arabidopsis thaliana]
gi|15450918|gb|AAK96730.1| transcription factor
EREBP-like protein [Arabidopsis thaliana]
gi|23198332|gb|AAN15693.1| transcription factor
EREBP-like protein [Arabidopsis thaliana]
Length = 375
Score = 135 bits (339), Expect = 4e-31
Identities = 88/189 (46%), Positives = 104/189 (54%), Gaps = 24/189 (12%)
Frame = +2
Query: 32 MCGGAIISDFIDEYPNRGRRLTTGDLCYDLDTLSDVFTSSSTHQPPSFHFDDVIPIPNNQ 211
MCGGAIISDFI P R R+T + DL S + F DD + Q
Sbjct: 1 MCGGAIISDFIP--PPRSLRVTNEFIWPDLKNKVKASKKRSNKRSDFFDLDDDFEA-DFQ 57
Query: 212 GV----ASSCEEKKRVMIEVEE-------------------KGSDEKSGES-EEGIKKGK 319
G A CE+ V + V+ +K+ ES E+ K K
Sbjct: 58 GFKDDSAFDCEDDDDVFVNVKPFVFTATTKPVASAFVSTVGSAYAKKTVESAEQAEKSSK 117
Query: 320 RVRKNLYRGIRQRPWGKWAAEIRDPRKGVRVGLGTFNTAEEAAQAYDDAAKRIRGDKAKL 499
R RKN YRGIRQRPWGKWAAEIRDPRKG R LGTF+TAEEAA+AYD AA+RIRG KAK+
Sbjct: 118 RKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKV 177
Query: 500 NFPDKPEPS 526
NFP++ PS
Sbjct: 178 NFPEEKNPS 186
>emb|CAC12822.1| AP2 domain-containing transcription factor [Nicotiana tabacum]
Length = 226
Score = 134 bits (337), Expect = 7e-31
Identities = 73/132 (55%), Positives = 88/132 (66%)
Frame = +2
Query: 128 LSDVFTSSSTHQPPSFHFDDVIPIPNNQGVASSCEEKKRVMIEVEEKGSDEKSGESEEGI 307
+SD ++SSS+ + D V + ++ + K +E KG+ E E
Sbjct: 1 ISDFWSSSSSSSSIAGKSDSVQSLTHSYNKPQKSDSGKLNQLE---KGTISVKVEKESS- 56
Query: 308 KKGKRVRKNLYRGIRQRPWGKWAAEIRDPRKGVRVGLGTFNTAEEAAQAYDDAAKRIRGD 487
G R RKN YRGIRQRPWGKWAAEIRDP+KGVRV LGTFNTAEEAA+AYD+AAKRIRGD
Sbjct: 57 --GPRARKNKYRGIRQRPWGKWAAEIRDPQKGVRVWLGTFNTAEEAARAYDEAAKRIRGD 114
Query: 488 KAKLNFPDKPEP 523
KAKLNFP+ P P
Sbjct: 115 KAKLNFPEPPSP 126
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 489,411,183
Number of Sequences: 1393205
Number of extensions: 11232386
Number of successful extensions: 47155
Number of sequences better than 10.0: 435
Number of HSP's better than 10.0 without gapping: 43710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46901
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
