Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005226A_C01 KMC005226A_c01
(576 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC33530.1| expansin [Prunus armeniaca] 342 2e-93
dbj|BAB19676.1| expansin [Prunus persica] 342 2e-93
gb|AAK48845.1|AF350936_1 expansin [Prunus cerasus] 340 6e-93
gb|AAF21101.1|AF159563_1 expansin [Fragaria x ananassa] 333 9e-91
emb|CAC18802.1| expansin [Glycine max] 329 2e-89
>gb|AAC33530.1| expansin [Prunus armeniaca]
Length = 252
Score = 342 bits (878), Expect = 2e-93
Identities = 154/172 (89%), Positives = 166/172 (95%)
Frame = +2
Query: 59 AISLIFFLLNLCLRGTYGDYGGGWQGGHATFDGGGDASGTMGGACGYGNLYSQGYGTNTA 238
AI+L+F +LNLCL+GTYGDYGGGW+GGHATF GGGDASGTMGGACGYGNLYSQGYGTNTA
Sbjct: 8 AIALLFSVLNLCLQGTYGDYGGGWEGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTA 67
Query: 239 ALSTALFNNGLSCGSCYEMRCDSDPRWCLPGSILVTATNFCPPNYALSNSNGGWCNPPLQ 418
ALSTALFN+GLSCGSCYEMRCDSDP+WCLPGSI+VTATNFCPPN A SN NGGWCNPPLQ
Sbjct: 68 ALSTALFNDGLSCGSCYEMRCDSDPKWCLPGSIIVTATNFCPPNLAQSNDNGGWCNPPLQ 127
Query: 419 HFDLAEPAFLKIAQYKAGIVPISFRTVSCVKKGGIRFTMNGHSYFNLVLVTN 574
HFDLAEPAFL+IAQY+AGIVPISFR VSCVKKGGIRFT+NGHSYFNLVL+TN
Sbjct: 128 HFDLAEPAFLQIAQYRAGIVPISFRRVSCVKKGGIRFTINGHSYFNLVLITN 179
>dbj|BAB19676.1| expansin [Prunus persica]
Length = 252
Score = 342 bits (877), Expect = 2e-93
Identities = 153/172 (88%), Positives = 166/172 (95%)
Frame = +2
Query: 59 AISLIFFLLNLCLRGTYGDYGGGWQGGHATFDGGGDASGTMGGACGYGNLYSQGYGTNTA 238
AI+L+F +LNLCL+GTYGDYGGGW+GGHATF GGGDASGTMGGACGYGNLYSQGYGTNTA
Sbjct: 8 AIALLFSVLNLCLQGTYGDYGGGWEGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTA 67
Query: 239 ALSTALFNNGLSCGSCYEMRCDSDPRWCLPGSILVTATNFCPPNYALSNSNGGWCNPPLQ 418
ALSTALFN+GLSCGSCYEMRCDSDP+WCLPGSI+VTATNFCPPN A SN NGGWCNPPLQ
Sbjct: 68 ALSTALFNDGLSCGSCYEMRCDSDPKWCLPGSIIVTATNFCPPNLAQSNDNGGWCNPPLQ 127
Query: 419 HFDLAEPAFLKIAQYKAGIVPISFRTVSCVKKGGIRFTMNGHSYFNLVLVTN 574
HFDLAEPAFL+IAQY+AGIVP+SFR VSCVKKGGIRFT+NGHSYFNLVL+TN
Sbjct: 128 HFDLAEPAFLQIAQYRAGIVPVSFRRVSCVKKGGIRFTINGHSYFNLVLITN 179
>gb|AAK48845.1|AF350936_1 expansin [Prunus cerasus]
Length = 253
Score = 340 bits (873), Expect = 6e-93
Identities = 152/171 (88%), Positives = 165/171 (95%)
Frame = +2
Query: 62 ISLIFFLLNLCLRGTYGDYGGGWQGGHATFDGGGDASGTMGGACGYGNLYSQGYGTNTAA 241
I+L+F +LNLCL+GTYGDYGGGW+GGHATF GGGDASGTMGGACGYGNLYSQGYGTNTAA
Sbjct: 9 IALLFSVLNLCLQGTYGDYGGGWEGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAA 68
Query: 242 LSTALFNNGLSCGSCYEMRCDSDPRWCLPGSILVTATNFCPPNYALSNSNGGWCNPPLQH 421
LSTALFN+GLSCGSCYEMRCDSDP+WCLPGSI+VTATNFCPPN A SN NGGWCNPPLQH
Sbjct: 69 LSTALFNDGLSCGSCYEMRCDSDPKWCLPGSIIVTATNFCPPNLAQSNDNGGWCNPPLQH 128
Query: 422 FDLAEPAFLKIAQYKAGIVPISFRTVSCVKKGGIRFTMNGHSYFNLVLVTN 574
FDLAEPAFL+IAQY+AGIVP+SFR VSCVKKGGIRFT+NGHSYFNLVL+TN
Sbjct: 129 FDLAEPAFLQIAQYRAGIVPVSFRRVSCVKKGGIRFTVNGHSYFNLVLITN 179
>gb|AAF21101.1|AF159563_1 expansin [Fragaria x ananassa]
Length = 253
Score = 333 bits (854), Expect = 9e-91
Identities = 148/172 (86%), Positives = 163/172 (94%)
Frame = +2
Query: 59 AISLIFFLLNLCLRGTYGDYGGGWQGGHATFDGGGDASGTMGGACGYGNLYSQGYGTNTA 238
AI+L+ +LNLC+RGTY DYG GW GGHATF GGGDASGTMGGACGYGNLYSQGYGTNTA
Sbjct: 8 AITLLVSVLNLCIRGTYADYGAGWVGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTA 67
Query: 239 ALSTALFNNGLSCGSCYEMRCDSDPRWCLPGSILVTATNFCPPNYALSNSNGGWCNPPLQ 418
ALSTALFN+GLSCGSCYEMRCD+DPRWCLPGSI+VTATNFCPPN+A +N NGGWCNPPLQ
Sbjct: 68 ALSTALFNDGLSCGSCYEMRCDNDPRWCLPGSIIVTATNFCPPNFAQANDNGGWCNPPLQ 127
Query: 419 HFDLAEPAFLKIAQYKAGIVPISFRTVSCVKKGGIRFTMNGHSYFNLVLVTN 574
HFDLAEPAFL+IAQY+AGIVP+SFR V+CVKKGGIRFT+NGHSYFNLVL+TN
Sbjct: 128 HFDLAEPAFLQIAQYRAGIVPVSFRRVACVKKGGIRFTINGHSYFNLVLITN 179
>emb|CAC18802.1| expansin [Glycine max]
Length = 181
Score = 329 bits (843), Expect = 2e-89
Identities = 145/160 (90%), Positives = 157/160 (97%)
Frame = +2
Query: 95 LRGTYGDYGGGWQGGHATFDGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLS 274
LRGTY DYGGGWQGGHATF GGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNG+S
Sbjct: 1 LRGTYADYGGGWQGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGMS 60
Query: 275 CGSCYEMRCDSDPRWCLPGSILVTATNFCPPNYALSNSNGGWCNPPLQHFDLAEPAFLKI 454
CGSCYEM+CD+DP+WCLPGSI+VTATNFCPPN+AL+N+NGGWCNPPLQHFDLAEPAFL+I
Sbjct: 61 CGSCYEMKCDTDPKWCLPGSIIVTATNFCPPNFALANNNGGWCNPPLQHFDLAEPAFLQI 120
Query: 455 AQYKAGIVPISFRTVSCVKKGGIRFTMNGHSYFNLVLVTN 574
AQYKAGIVP+SFR VSCVKKGGIRFT+NGHSYFNLVL+TN
Sbjct: 121 AQYKAGIVPVSFRRVSCVKKGGIRFTINGHSYFNLVLITN 160
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 542,475,559
Number of Sequences: 1393205
Number of extensions: 13214792
Number of successful extensions: 105651
Number of sequences better than 10.0: 1198
Number of HSP's better than 10.0 without gapping: 57697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89071
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
