Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005225A_C01 KMC005225A_c01
(502 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00089725.1| hypothetical protein [Azotobacter vinelandii] 35 0.36
ref|XP_142883.1| similar to serine/threonine kinase [Rattus norv... 32 4.0
>ref|ZP_00089725.1| hypothetical protein [Azotobacter vinelandii]
Length = 1455
Score = 35.4 bits (80), Expect = 0.36
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 21 LLLGNIYTKMVVTLDGFQLLQPLTRAVHNISTYEYNLTHTWQLIQSYIPAYN 176
L L +Y M++TL FQ + PL RA+ + +L+ W + YIP YN
Sbjct: 96 LYLAEVYVWMILTLGYFQTVMPLKRAIRPLPE---DLSQ-WPTVDVYIPTYN 143
>ref|XP_142883.1| similar to serine/threonine kinase [Rattus norvegicus] [Mus
musculus]
Length = 402
Score = 32.0 bits (71), Expect = 4.0
Identities = 17/45 (37%), Positives = 23/45 (50%)
Frame = -2
Query: 192 SNVLVNCKPECSFVLIARYELSCIHKLIYCVPLLLAAVKAENHPM 58
SN+L++C+ +C V L YC P LL AVK E P+
Sbjct: 149 SNILIDCRGKCQAVFCGT--------LPYCAPELLQAVKYEGPPV 185
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 416,908,047
Number of Sequences: 1393205
Number of extensions: 8461484
Number of successful extensions: 18899
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18896
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
