Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005218A_C01 KMC005218A_c01
(412 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187110.1| putative tryptophanyl-tRNA synthetase; protein ... 131 1e-42
gb|AAH46713.1| Similar to tryptophanyl-tRNA synthetase [Xenopus ... 110 3e-27
ref|NP_004175.1| tryptophanyl-tRNA synthetase; interferon-induce... 104 6e-27
emb|CAA44450.1| IFP53 [Homo sapiens] 104 6e-27
sp|P23381|SYW_HUMAN Tryptophanyl-tRNA synthetase (Tryptophan--tR... 104 6e-27
>ref|NP_187110.1| putative tryptophanyl-tRNA synthetase; protein id: At3g04600.1,
supported by cDNA: gi_19310592 [Arabidopsis thaliana]
gi|6175164|gb|AAF04890.1|AC011437_5 putative
tryptophanyl-tRNA synthetase [Arabidopsis thaliana]
gi|19310593|gb|AAL85027.1| putative tryptophanyl-tRNA
synthetase [Arabidopsis thaliana]
gi|21436361|gb|AAM51350.1| putative tryptophanyl-tRNA
synthetase [Arabidopsis thaliana]
Length = 402
Score = 131 bits (330), Expect(2) = 1e-42
Identities = 60/75 (80%), Positives = 67/75 (89%)
Frame = +3
Query: 186 FGCQRLDQSLIQRLERLTSQPAHVFLRRGVFFAHRDFTDISDAYEKGDRFYCYTGRGPSS 365
FGCQRLD+SLI R++RLTS+ HVFLRR VFFAHRDF +I DAYE+GD+FY YTGRGPSS
Sbjct: 40 FGCQRLDESLIDRVQRLTSRQPHVFLRRSVFFAHRDFNEILDAYERGDKFYLYTGRGPSS 99
Query: 366 EALHLGHSIPFMFTK 410
EALHLGH IPFMFTK
Sbjct: 100 EALHLGHLIPFMFTK 114
Score = 62.0 bits (149), Expect(2) = 1e-42
Identities = 28/40 (70%), Positives = 32/40 (80%)
Frame = +2
Query: 68 VEMAAPSETKKEEEEQVVNPWEVSAKDGGKIDYDKLIDRF 187
+E+ E + E EQVVNPWEVSAKDGGKIDYDKLID+F
Sbjct: 1 MEVDKKDEREAESSEQVVNPWEVSAKDGGKIDYDKLIDKF 40
>gb|AAH46713.1| Similar to tryptophanyl-tRNA synthetase [Xenopus laevis]
Length = 475
Score = 110 bits (275), Expect(2) = 3e-27
Identities = 49/75 (65%), Positives = 60/75 (79%)
Frame = +3
Query: 186 FGCQRLDQSLIQRLERLTSQPAHVFLRRGVFFAHRDFTDISDAYEKGDRFYCYTGRGPSS 365
FG ++DQ+LI R+ER+T Q AH FLRRG+FF+HRD + DAYEK FY YTGRGPSS
Sbjct: 112 FGSSKIDQALIDRIERVTGQKAHHFLRRGIFFSHRDMHQVLDAYEKKKPFYLYTGRGPSS 171
Query: 366 EALHLGHSIPFMFTK 410
EA+H+GH IPF+FTK
Sbjct: 172 EAMHVGHLIPFIFTK 186
Score = 31.2 bits (69), Expect(2) = 3e-27
Identities = 19/53 (35%), Positives = 25/53 (46%)
Frame = +2
Query: 41 LPPANADARVEMAAPSETKKEEEEQVVNPWEVSAKDGGKIDYDKLIDRFRMPK 199
+PPA+ D PS + + V+PW V +DYDKLI RF K
Sbjct: 67 VPPAD-DMPTNRNGPSTPN--DGDDFVDPWTVQTGSAKGVDYDKLIVRFGSSK 116
>ref|NP_004175.1| tryptophanyl-tRNA synthetase; interferon-induced protein 53 [Homo
sapiens] gi|340368|gb|AAA61298.1| transfer RNA-Trp
synthetase
Length = 471
Score = 104 bits (259), Expect(2) = 6e-27
Identities = 46/75 (61%), Positives = 56/75 (74%)
Frame = +3
Query: 186 FGCQRLDQSLIQRLERLTSQPAHVFLRRGVFFAHRDFTDISDAYEKGDRFYCYTGRGPSS 365
FG ++D+ LI R+ER T Q H FLRRG+FF+HRD + DAYE FY YTGRGPSS
Sbjct: 107 FGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSS 166
Query: 366 EALHLGHSIPFMFTK 410
EA+H+GH IPF+FTK
Sbjct: 167 EAMHVGHLIPFIFTK 181
Score = 36.6 bits (83), Expect(2) = 6e-27
Identities = 23/52 (44%), Positives = 24/52 (45%)
Frame = +2
Query: 44 PPANADARVEMAAPSETKKEEEEQVVNPWEVSAKDGGKIDYDKLIDRFRMPK 199
PP N A P T E EE V+PW V IDYDKLI RF K
Sbjct: 63 PPGNP-APTSNHGPDAT--EAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSK 111
>emb|CAA44450.1| IFP53 [Homo sapiens]
Length = 471
Score = 104 bits (259), Expect(2) = 6e-27
Identities = 46/75 (61%), Positives = 56/75 (74%)
Frame = +3
Query: 186 FGCQRLDQSLIQRLERLTSQPAHVFLRRGVFFAHRDFTDISDAYEKGDRFYCYTGRGPSS 365
FG ++D+ LI R+ER T Q H FLRRG+FF+HRD + DAYE FY YTGRGPSS
Sbjct: 107 FGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSS 166
Query: 366 EALHLGHSIPFMFTK 410
EA+H+GH IPF+FTK
Sbjct: 167 EAMHVGHLIPFIFTK 181
Score = 36.6 bits (83), Expect(2) = 6e-27
Identities = 23/52 (44%), Positives = 24/52 (45%)
Frame = +2
Query: 44 PPANADARVEMAAPSETKKEEEEQVVNPWEVSAKDGGKIDYDKLIDRFRMPK 199
PP N A P T E EE V+PW V IDYDKLI RF K
Sbjct: 63 PPGNP-APTSNHGPDAT--EAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSK 111
>sp|P23381|SYW_HUMAN Tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TRPRS)
(IFP53) (hWRS) gi|107990|pir||A41706 tryptophan-tRNA
ligase (EC 6.1.1.2) [similarity] - human
gi|30821|emb|CAA42545.1| 471 aa polypeptide (gamma2)
[Homo sapiens] gi|184657|gb|AAA67324.1| transfer RNA-Trp
synthetase gi|17028363|gb|AAH17489.1|AAH17489 Unknown
(protein for MGC:15973) [Homo sapiens]
gi|28193186|emb|CAD62335.1| unnamed protein product
[Homo sapiens]
Length = 471
Score = 104 bits (259), Expect(2) = 6e-27
Identities = 46/75 (61%), Positives = 56/75 (74%)
Frame = +3
Query: 186 FGCQRLDQSLIQRLERLTSQPAHVFLRRGVFFAHRDFTDISDAYEKGDRFYCYTGRGPSS 365
FG ++D+ LI R+ER T Q H FLRRG+FF+HRD + DAYE FY YTGRGPSS
Sbjct: 107 FGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSS 166
Query: 366 EALHLGHSIPFMFTK 410
EA+H+GH IPF+FTK
Sbjct: 167 EAMHVGHLIPFIFTK 181
Score = 36.6 bits (83), Expect(2) = 6e-27
Identities = 23/52 (44%), Positives = 24/52 (45%)
Frame = +2
Query: 44 PPANADARVEMAAPSETKKEEEEQVVNPWEVSAKDGGKIDYDKLIDRFRMPK 199
PP N A P T E EE V+PW V IDYDKLI RF K
Sbjct: 63 PPGNP-APTSNHGPDAT--EAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSK 111
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 382,432,309
Number of Sequences: 1393205
Number of extensions: 8354565
Number of successful extensions: 43530
Number of sequences better than 10.0: 209
Number of HSP's better than 10.0 without gapping: 40097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43358
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 7023606888
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
