Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005217A_C01 KMC005217A_c01
(541 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199497.1| unknown protein; protein id: At5g46850.1 [Arabi... 87 3e-22
ref|NP_588484.1| hypothetical protein [Schizosaccharomyces pombe... 42 0.006
ref|XP_213602.1| similar to RIKEN cDNA 2010319C14 [Mus musculus]... 39 0.053
gb|EAA27989.1| hypothetical protein [Neurospora crassa] 37 0.12
ref|NP_077784.1| RIKEN cDNA 2010319C14 [Mus musculus] gi|1280545... 37 0.15
>ref|NP_199497.1| unknown protein; protein id: At5g46850.1 [Arabidopsis thaliana]
gi|8809668|dbj|BAA97219.1| gene_id:MSD23.3~unknown
protein [Arabidopsis thaliana]
Length = 296
Score = 87.4 bits (215), Expect(2) = 3e-22
Identities = 44/87 (50%), Positives = 62/87 (70%), Gaps = 3/87 (3%)
Frame = -3
Query: 539 DIAVFGDTNLERPSFLSHRSAVEIHLDVDPNILLEPSHINIELPLHARYQPLNESGYSTI 360
D++VFGDTNLE PSF S+RS VEIH+++ E I+ +LPLHARYQPL++SGYS +
Sbjct: 150 DVSVFGDTNLELPSFRSNRSVVEIHVEISSRNY-ENGEISFKLPLHARYQPLDDSGYSRV 208
Query: 359 KFGKPDLLVRCST---KEKMGNRNCFL 288
+FG+PDL + CS+ ++ R C +
Sbjct: 209 EFGEPDLFL-CSSHVQNQRRERRRCLV 234
Score = 39.3 bits (90), Expect(2) = 3e-22
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = -1
Query: 247 LFWRIPAGRKAHADVVSAVTFIAALLSTLVIAVTS 143
+FW IPAG + H + VSA+TF AA+ S I V S
Sbjct: 247 VFWDIPAGIRGHTEYVSALTFAAAVFSAFSILVAS 281
>ref|NP_588484.1| hypothetical protein [Schizosaccharomyces pombe]
gi|7491875|pir||T41227 hypothetical protein SPCC1919.02
- fission yeast (Schizosaccharomyces pombe)
gi|4107305|emb|CAA22633.1| hypothetical protein
[Schizosaccharomyces pombe]
Length = 332
Score = 41.6 bits (96), Expect = 0.006
Identities = 23/80 (28%), Positives = 41/80 (50%), Gaps = 2/80 (2%)
Frame = -3
Query: 536 IAVFGDTNLERPSFLSHRSAVEIHLDV-DPNILLEPSHINIELPLHARYQ-PLNESGYST 363
+ ++G+T+LE PS+ + + D+ + LL+ +I+ +PLH RYQ PL Y
Sbjct: 190 LGIWGETDLEAPSYKLNGTGSFFWFDIYTDDGLLQKDYIDTIIPLHTRYQSPLKGQTYLK 249
Query: 362 IKFGKPDLLVRCSTKEKMGN 303
P C T++K+ +
Sbjct: 250 TSLTNPKFFWNCDTEDKVND 269
>ref|XP_213602.1| similar to RIKEN cDNA 2010319C14 [Mus musculus] [Rattus norvegicus]
Length = 150
Score = 38.5 bits (88), Expect = 0.053
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = -3
Query: 515 NLERPSFLSHRSAVEIHLDVDPNILLEPSHINIELPLHARY-QPLNESGYSTIKFGKPDL 339
NLE PS+LS SAV I+ D + LP+H RY +P + G + I PDL
Sbjct: 7 NLEAPSYLSTESAVLIYARQDAQCI---DCFQAFLPVHYRYHRPHKKDGDTLIVVNNPDL 63
Query: 338 LVRC 327
L+ C
Sbjct: 64 LMHC 67
>gb|EAA27989.1| hypothetical protein [Neurospora crassa]
Length = 501
Score = 37.4 bits (85), Expect = 0.12
Identities = 19/67 (28%), Positives = 33/67 (48%)
Frame = -3
Query: 515 NLERPSFLSHRSAVEIHLDVDPNILLEPSHINIELPLHARYQPLNESGYSTIKFGKPDLL 336
+LE P ++ R + L++ P E +++PLH RY E GY+ I+ P +
Sbjct: 334 DLEAPEYVEKRWGSSLLLELSPPEHEESKSWTVQVPLHLRYLSPAEGGYTDIQVPYPAVF 393
Query: 335 VRCSTKE 315
C+ +E
Sbjct: 394 WACAAEE 400
>ref|NP_077784.1| RIKEN cDNA 2010319C14 [Mus musculus] gi|12805459|gb|AAH02202.1|
Unknown (protein for MGC:7441) [Mus musculus]
gi|26361065|dbj|BAC25223.1| unnamed protein product [Mus
musculus]
Length = 150
Score = 37.0 bits (84), Expect = 0.15
Identities = 23/64 (35%), Positives = 34/64 (52%), Gaps = 1/64 (1%)
Frame = -3
Query: 515 NLERPSFLSHRSAVEIHLDVDPNILLEPSHINIELPLHARY-QPLNESGYSTIKFGKPDL 339
N+E P++LS+ SAV I+ D + LP+H RY +P + G + I PDL
Sbjct: 7 NIEAPNYLSNESAVLIYARQDAQCI---DCFQAFLPVHYRYHRPHKKDGDTLIVVNNPDL 63
Query: 338 LVRC 327
L+ C
Sbjct: 64 LMYC 67
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 434,634,081
Number of Sequences: 1393205
Number of extensions: 8975684
Number of successful extensions: 21963
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 20853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21826
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
