Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005214A_C01 KMC005214A_c01
(193 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T02873 probable photosystem II oxygen-evolving complex prot... 51 4e-06
pir||T03873 photosystem II oxygen-evolving complex protein 2 pre... 51 4e-06
ref|NP_172153.1| photosystem II oxygen-evolving complex 23 (OEC2... 50 9e-06
pir||T02078 photosystem II oxygen-evolving complex protein - ric... 50 1e-05
sp|Q9SLQ8|PSBP_CUCSA Oxygen-evolving enhancer protein 2, chlorop... 50 1e-05
>pir||T02873 probable photosystem II oxygen-evolving complex protein 2 precursor
- rice gi|4079798|gb|AAC98778.1| 23 kDa polypeptide of
photosystem II [Oryza sativa]
gi|24059930|dbj|BAC21393.1| probable photosystem II
oxygen-evolving complex protein 2 precursor [Oryza
sativa (japonica cultivar-group)]
Length = 254
Score = 51.2 bits (121), Expect = 4e-06
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -3
Query: 191 AGDKRWFKGARKFVESAASSFSVA 120
AGDKRWFKGARKFVESAASSFSVA
Sbjct: 231 AGDKRWFKGARKFVESAASSFSVA 254
>pir||T03873 photosystem II oxygen-evolving complex protein 2 precursor - rice
gi|1398999|dbj|BAA08564.1| 23 kDa polypeptide of
photosystem II [Oryza sativa]
Length = 252
Score = 51.2 bits (121), Expect = 4e-06
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -3
Query: 191 AGDKRWFKGARKFVESAASSFSVA 120
AGDKRWFKGARKFVESAASSFSVA
Sbjct: 229 AGDKRWFKGARKFVESAASSFSVA 252
>ref|NP_172153.1| photosystem II oxygen-evolving complex 23 (OEC23); protein id:
At1g06680.1, supported by cDNA: 33922., supported by
cDNA: gi_15912276, supported by cDNA: gi_17979236,
supported by cDNA: gi_18377709, supported by cDNA:
gi_20465404 [Arabidopsis thaliana]
gi|18206371|sp|Q42029|PSP1_ARATH Oxygen-evolving
enhancer protein 2-1, chloroplast precursor (OEE2) (23
kDa subunit of oxygen evolving system of photosystem II)
(OEC 23 kDa subunit) (23 kDa thylakoid membrane protein)
gi|7443217|pir||JC5271 oxygen-evolving complex 23K
protein - Arabidopsis thaliana
gi|1769905|emb|CAA66785.1| 23 kDa polypeptide of
oxygen-evolving comlex (OEC) [Arabidopsis thaliana]
gi|6692695|gb|AAF24829.1|AC007592_22 F12K11.3
[Arabidopsis thaliana] gi|15912277|gb|AAL08272.1|
At1g06680/F4H5_18 [Arabidopsis thaliana]
gi|17979237|gb|AAL49935.1| At1g06680/F4H5_18
[Arabidopsis thaliana] gi|18377710|gb|AAL67005.1|
putative 23 kDa polypeptide of oxygen-evolving comlex
protein [Arabidopsis thaliana]
gi|20465405|gb|AAM20127.1| putative 23 kDa polypeptide
of oxygen-evolving complex (OEC) [Arabidopsis thaliana]
gi|21592906|gb|AAM64856.1| 23 kDa polypeptide of
oxygen-evolving comlex (OEC) [Arabidopsis thaliana]
Length = 263
Score = 50.1 bits (118), Expect = 9e-06
Identities = 23/24 (95%), Positives = 24/24 (99%)
Frame = -3
Query: 191 AGDKRWFKGARKFVESAASSFSVA 120
AGDKRWFKGARKFVESAA+SFSVA
Sbjct: 240 AGDKRWFKGARKFVESAATSFSVA 263
>pir||T02078 photosystem II oxygen-evolving complex protein - rice
gi|2570499|gb|AAB82135.1| 23kDa polypeptide of
photosystem II [Oryza sativa]
Length = 254
Score = 49.7 bits (117), Expect = 1e-05
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = -3
Query: 188 GDKRWFKGARKFVESAASSFSVA 120
GDKRWFKGARKFVESAASSFSVA
Sbjct: 232 GDKRWFKGARKFVESAASSFSVA 254
>sp|Q9SLQ8|PSBP_CUCSA Oxygen-evolving enhancer protein 2, chloroplast precursor (OEE2)
(23 kDa subunit of oxygen evolving system of photosystem
II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane
protein) (OEC23) gi|6691487|dbj|BAA89317.1| 23kDa
polypeptide of the oxygen-evolving complex of
photosystem II [Cucumis sativus]
Length = 263
Score = 49.7 bits (117), Expect = 1e-05
Identities = 23/24 (95%), Positives = 23/24 (95%)
Frame = -3
Query: 191 AGDKRWFKGARKFVESAASSFSVA 120
AGDKRWFKGARKFVE AASSFSVA
Sbjct: 240 AGDKRWFKGARKFVEGAASSFSVA 263
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,464,775
Number of Sequences: 1393205
Number of extensions: 2590301
Number of successful extensions: 4885
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 4843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4885
length of database: 448,689,247
effective HSP length: 39
effective length of database: 394,354,252
effective search space used: 9464502048
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
