Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005213A_C01 KMC005213A_c01
(513 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC34417.1| Germin-like protein [Pisum sativum] 160 6e-39
sp|Q9ZRA4|ABPA_PRUPE Auxin-binding protein ABP19a precursor gi|4... 158 4e-38
pir||T06542 germin-like protein - garden pea (fragment) gi|27392... 154 4e-37
sp|O04011|AB20_PRUPE Auxin-binding protein ABP20 precursor gi|19... 154 6e-37
sp|O04012|ABPB_PRUPE Auxin-binding protein ABP19b precursor gi|1... 144 5e-34
>emb|CAC34417.1| Germin-like protein [Pisum sativum]
Length = 211
Score = 160 bits (406), Expect = 6e-39
Identities = 80/98 (81%), Positives = 88/98 (89%)
Frame = -1
Query: 513 VVQGTICAGFVASDNTVYLKTLKKGDVMVFPQGLVHFQIHDGGSSALAFVSFSSANPGLQ 334
V+QGTI AGFV+S N VYLKTL KGDVMVFPQGL+HFQI+ G S+ALAFVSFSSANPGLQ
Sbjct: 114 VIQGTILAGFVSSANVVYLKTLNKGDVMVFPQGLLHFQINSGRSNALAFVSFSSANPGLQ 173
Query: 333 ILDFALFKSDFPSDLIAATAFLDAAQIKKLKGVLGGSG 220
ILDFALFKSDFP++LI AT FLDA +KKLKGVLGGSG
Sbjct: 174 ILDFALFKSDFPTELITATTFLDAGLVKKLKGVLGGSG 211
>sp|Q9ZRA4|ABPA_PRUPE Auxin-binding protein ABP19a precursor gi|4098517|gb|AAD00295.1|
auxin-binding protein ABP19 [Prunus persica]
Length = 209
Score = 158 bits (399), Expect = 4e-38
Identities = 78/97 (80%), Positives = 88/97 (90%)
Frame = -1
Query: 513 VVQGTICAGFVASDNTVYLKTLKKGDVMVFPQGLVHFQIHDGGSSALAFVSFSSANPGLQ 334
VVQGTI AGFVASDNT YLKTLKKGD+MVFPQGL+HFQ++ GG+ ALAF SFSS +PGLQ
Sbjct: 112 VVQGTIIAGFVASDNTPYLKTLKKGDIMVFPQGLLHFQVNGGGTPALAFPSFSSPSPGLQ 171
Query: 333 ILDFALFKSDFPSDLIAATAFLDAAQIKKLKGVLGGS 223
ILDFALFK+D P++LIA T FLDAAQIKKLKGVLGG+
Sbjct: 172 ILDFALFKNDLPTELIAQTTFLDAAQIKKLKGVLGGT 208
>pir||T06542 germin-like protein - garden pea (fragment)
gi|2739260|emb|CAA11031.1| germin-like protein [Pisum
sativum]
Length = 107
Score = 154 bits (390), Expect = 4e-37
Identities = 77/95 (81%), Positives = 85/95 (89%)
Frame = -1
Query: 513 VVQGTICAGFVASDNTVYLKTLKKGDVMVFPQGLVHFQIHDGGSSALAFVSFSSANPGLQ 334
V+QGTI AGFV+S N VYLKTL KGDVMVFPQGL+HFQI+ G S+ALAFVSFSSANPGLQ
Sbjct: 13 VIQGTILAGFVSSANVVYLKTLNKGDVMVFPQGLLHFQINSGRSNALAFVSFSSANPGLQ 72
Query: 333 ILDFALFKSDFPSDLIAATAFLDAAQIKKLKGVLG 229
ILDFALFKSDFP++LI AT FLDA +KKLKGVLG
Sbjct: 73 ILDFALFKSDFPTELITATTFLDAGLVKKLKGVLG 107
>sp|O04011|AB20_PRUPE Auxin-binding protein ABP20 precursor gi|1916807|gb|AAB51240.1|
auxin-binding protein [Prunus persica]
Length = 214
Score = 154 bits (389), Expect = 6e-37
Identities = 74/97 (76%), Positives = 87/97 (89%)
Frame = -1
Query: 513 VVQGTICAGFVASDNTVYLKTLKKGDVMVFPQGLVHFQIHDGGSSALAFVSFSSANPGLQ 334
V QGTICAGFVASDNT YL+TL+KGD+MVFPQGL+HFQ++ G + ALAF SF SA+PGLQ
Sbjct: 117 VAQGTICAGFVASDNTPYLQTLEKGDIMVFPQGLLHFQVNGGEAPALAFASFGSASPGLQ 176
Query: 333 ILDFALFKSDFPSDLIAATAFLDAAQIKKLKGVLGGS 223
ILDFALFK+D P+++IA T FLDAAQIKKLKGVLGG+
Sbjct: 177 ILDFALFKNDLPTEVIAQTTFLDAAQIKKLKGVLGGT 213
>sp|O04012|ABPB_PRUPE Auxin-binding protein ABP19b precursor gi|1916809|gb|AAB51241.1|
auxin-binding protein [Prunus persica]
Length = 209
Score = 144 bits (364), Expect = 5e-34
Identities = 71/97 (73%), Positives = 84/97 (86%)
Frame = -1
Query: 513 VVQGTICAGFVASDNTVYLKTLKKGDVMVFPQGLVHFQIHDGGSSALAFVSFSSANPGLQ 334
VVQGTI AGFVASDNT YLKTLKKGD++VFPQGL+HFQ++ G + A+AF SFSS +PGLQ
Sbjct: 112 VVQGTIIAGFVASDNTPYLKTLKKGDIIVFPQGLLHFQVNGGDTPAIAFPSFSSPSPGLQ 171
Query: 333 ILDFALFKSDFPSDLIAATAFLDAAQIKKLKGVLGGS 223
I+DFALFK+D ++LIA T LDA QIKKLKGVLGG+
Sbjct: 172 IVDFALFKNDLATELIAQTTLLDAPQIKKLKGVLGGT 208
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 459,397,737
Number of Sequences: 1393205
Number of extensions: 10019191
Number of successful extensions: 35580
Number of sequences better than 10.0: 255
Number of HSP's better than 10.0 without gapping: 31539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34970
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
